Results 21 - 40 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
25568 | 3' | -55.9 | NC_005337.1 | + | 78543 | 0.71 | 0.651673 |
Target: 5'- uGGAcCCGUaCACGggCGCGCCGUgCGCGu -3' miRNA: 3'- -CUUaGGCA-GUGCgaGUGCGGCA-GCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 118182 | 0.71 | 0.651673 |
Target: 5'- cGGAcCCGUUcgaGCUCGCGCCGgugggCGCGg -3' miRNA: 3'- -CUUaGGCAGug-CGAGUGCGGCa----GCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 58858 | 0.7 | 0.692591 |
Target: 5'- --cUUCG-CGCGCUCgcGCGCCGUcCGCGc -3' miRNA: 3'- cuuAGGCaGUGCGAG--UGCGGCA-GCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 81730 | 0.7 | 0.71278 |
Target: 5'- ---gUCGuUCAgGCUCugGCUGUCGCc -3' miRNA: 3'- cuuaGGC-AGUgCGAGugCGGCAGCGu -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 128306 | 0.7 | 0.682416 |
Target: 5'- uGGcgCCGUC-UGCUCGCGCgCGgCGCGa -3' miRNA: 3'- -CUuaGGCAGuGCGAGUGCG-GCaGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 21923 | 0.7 | 0.682416 |
Target: 5'- gGAGguggCCG-CGCGCUC-CGCCGagcUCGCGg -3' miRNA: 3'- -CUUa---GGCaGUGCGAGuGCGGC---AGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 8317 | 0.7 | 0.71278 |
Target: 5'- --uUCCG-CGCGUUCACGCCcaCGCc -3' miRNA: 3'- cuuAGGCaGUGCGAGUGCGGcaGCGu -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 74573 | 0.7 | 0.702716 |
Target: 5'- ---gCCGcgcggCACGCggaCGCGCUGUCGCGc -3' miRNA: 3'- cuuaGGCa----GUGCGa--GUGCGGCAGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 7843 | 0.7 | 0.672198 |
Target: 5'- ---gUgGUaCACGCgcacgCGCGCCGUCGCGc -3' miRNA: 3'- cuuaGgCA-GUGCGa----GUGCGGCAGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 98501 | 0.69 | 0.742518 |
Target: 5'- -cGUCCGUCAUGacaCGCGCCacgaucccgGUCGCGc -3' miRNA: 3'- cuUAGGCAGUGCga-GUGCGG---------CAGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 129070 | 0.69 | 0.761871 |
Target: 5'- aGAggUgGUCGCGCUgCugGCCGagggCGCAg -3' miRNA: 3'- -CUuaGgCAGUGCGA-GugCGGCa---GCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 98835 | 0.69 | 0.771378 |
Target: 5'- ---gCgGUCGCGCccacCGCGCCGUgCGCGu -3' miRNA: 3'- cuuaGgCAGUGCGa---GUGCGGCA-GCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 100988 | 0.69 | 0.732691 |
Target: 5'- --cUUCGUCugGCUCGuCGCCacgcUCGCGg -3' miRNA: 3'- cuuAGGCAGugCGAGU-GCGGc---AGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 72363 | 0.69 | 0.732691 |
Target: 5'- --uUCCGcgcgaUCGCGCggACgGCCGUCGCGg -3' miRNA: 3'- cuuAGGC-----AGUGCGagUG-CGGCAGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 28486 | 0.69 | 0.732691 |
Target: 5'- cGGAUgCGgcCGCGCggCGCGCgGUCGCGc -3' miRNA: 3'- -CUUAgGCa-GUGCGa-GUGCGgCAGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 103361 | 0.69 | 0.752248 |
Target: 5'- cGAGUCCaucggCGCaggGCUCGCcuGCCGUCGCu -3' miRNA: 3'- -CUUAGGca---GUG---CGAGUG--CGGCAGCGu -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 105781 | 0.69 | 0.761871 |
Target: 5'- ---gCCG-CGCGCcgCGCGCCG-CGCGg -3' miRNA: 3'- cuuaGGCaGUGCGa-GUGCGGCaGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 108839 | 0.69 | 0.722775 |
Target: 5'- ---gCCGaagCGCGCgggcgaCACGCCGUCGUg -3' miRNA: 3'- cuuaGGCa--GUGCGa-----GUGCGGCAGCGu -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 100674 | 0.69 | 0.722775 |
Target: 5'- ----aCGcCGCGUUCGCGCCG-CGCGc -3' miRNA: 3'- cuuagGCaGUGCGAGUGCGGCaGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 2078 | 0.69 | 0.726751 |
Target: 5'- -uGUCCGcgagCGCGCUCgACGCCagcgccagcgccuccGUCGCGu -3' miRNA: 3'- cuUAGGCa---GUGCGAG-UGCGG---------------CAGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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