Results 41 - 60 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
25568 | 3' | -55.9 | NC_005337.1 | + | 2078 | 0.69 | 0.726751 |
Target: 5'- -uGUCCGcgagCGCGCUCgACGCCagcgccagcgccuccGUCGCGu -3' miRNA: 3'- cuUAGGCa---GUGCGAG-UGCGG---------------CAGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 101237 | 0.68 | 0.780758 |
Target: 5'- -cGUCCGcgCGCguGCUCGCGCUGgacggCGCGg -3' miRNA: 3'- cuUAGGCa-GUG--CGAGUGCGGCa----GCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 6891 | 0.68 | 0.790004 |
Target: 5'- -cGUCCauGUCGCGCgcgcgcgggucCGCGCCGgcgCGCAg -3' miRNA: 3'- cuUAGG--CAGUGCGa----------GUGCGGCa--GCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 119404 | 0.68 | 0.799105 |
Target: 5'- gGAGUCgCGUCGgaaGuCUCGC-CCGUCGCGc -3' miRNA: 3'- -CUUAG-GCAGUg--C-GAGUGcGGCAGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 109254 | 0.68 | 0.816842 |
Target: 5'- -uGUCCGcCGCGCgCACGUCGaaGCGg -3' miRNA: 3'- cuUAGGCaGUGCGaGUGCGGCagCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 63465 | 0.68 | 0.799105 |
Target: 5'- uGGAUgUCGUCgaugACGCUCACcaGCCGcCGCAu -3' miRNA: 3'- -CUUA-GGCAG----UGCGAGUG--CGGCaGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 80357 | 0.68 | 0.790004 |
Target: 5'- uGAA-CCagcaCGCGUUCGCGCCgGUCGCGg -3' miRNA: 3'- -CUUaGGca--GUGCGAGUGCGG-CAGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 82172 | 0.68 | 0.816842 |
Target: 5'- ---cCCGUCGCGCaccugCACGCgGcCGCc -3' miRNA: 3'- cuuaGGCAGUGCGa----GUGCGgCaGCGu -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 98049 | 0.68 | 0.780758 |
Target: 5'- -cGUCCGggagCGCGC-CGCGgCCGgCGCAa -3' miRNA: 3'- cuUAGGCa---GUGCGaGUGC-GGCaGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 58697 | 0.67 | 0.865725 |
Target: 5'- cGGUCaGUCGCG-UCAuCGCCGUCgGCAg -3' miRNA: 3'- cUUAGgCAGUGCgAGU-GCGGCAG-CGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 27419 | 0.67 | 0.850212 |
Target: 5'- --cUCCGcaaagCACGCgccCGgGUCGUCGCAg -3' miRNA: 3'- cuuAGGCa----GUGCGa--GUgCGGCAGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 3016 | 0.67 | 0.850212 |
Target: 5'- --cUCCGgcaGCGCgugCGCGCCGaugugCGCGa -3' miRNA: 3'- cuuAGGCag-UGCGa--GUGCGGCa----GCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 75177 | 0.67 | 0.850212 |
Target: 5'- ---cUCGUCGC-CUCGCGCgCGUcCGCGg -3' miRNA: 3'- cuuaGGCAGUGcGAGUGCG-GCA-GCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 103810 | 0.67 | 0.850212 |
Target: 5'- ---aCCGUCGCGCUCAUGuCCuUCaaggGCAu -3' miRNA: 3'- cuuaGGCAGUGCGAGUGC-GGcAG----CGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 123838 | 0.67 | 0.858072 |
Target: 5'- --cUCCGUCccgGCGUUCGCGgCGU-GCAu -3' miRNA: 3'- cuuAGGCAG---UGCGAGUGCgGCAgCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 49612 | 0.67 | 0.842152 |
Target: 5'- -cGUCCGacgaccagaUCACGCggACGuuGUCGCu -3' miRNA: 3'- cuUAGGC---------AGUGCGagUGCggCAGCGu -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 24800 | 0.67 | 0.833898 |
Target: 5'- aGAUCCGgaagCGCGCcCACGCgCGcaCGCAc -3' miRNA: 3'- cUUAGGCa---GUGCGaGUGCG-GCa-GCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 49674 | 0.67 | 0.825459 |
Target: 5'- -cAUCCGUCGCGUguagCGCGCCuugaGCu -3' miRNA: 3'- cuUAGGCAGUGCGa---GUGCGGcag-CGu -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 88504 | 0.67 | 0.842152 |
Target: 5'- ---gCCGUCAUGgaCAgCGCCG-CGCGg -3' miRNA: 3'- cuuaGGCAGUGCgaGU-GCGGCaGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 118928 | 0.67 | 0.842152 |
Target: 5'- uGGAagCGUCGCGCggGCGCagcgugCGUCGCGc -3' miRNA: 3'- -CUUagGCAGUGCGagUGCG------GCAGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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