miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 3' -55.9 NC_005337.1 + 99049 1.09 0.002709
Target:  5'- cGAAUCCGUCACGCUCACGCCGUCGCAg -3'
miRNA:   3'- -CUUAGGCAGUGCGAGUGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 95296 0.79 0.246413
Target:  5'- cGAGUCCGUaggCGCGCggCGCGCUGUUGCGc -3'
miRNA:   3'- -CUUAGGCA---GUGCGa-GUGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 5958 0.77 0.312237
Target:  5'- -----aGUCGCGCUCGCGCCGcgCGCGa -3'
miRNA:   3'- cuuaggCAGUGCGAGUGCGGCa-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 38890 0.74 0.471203
Target:  5'- gGAGUUCG-CGCGCgucgCGCgGCCGUCGCu -3'
miRNA:   3'- -CUUAGGCaGUGCGa---GUG-CGGCAGCGu -5'
25568 3' -55.9 NC_005337.1 + 61844 0.74 0.480683
Target:  5'- -cGUCgCGgagCACGCUCACGCCGU-GCu -3'
miRNA:   3'- cuUAG-GCa--GUGCGAGUGCGGCAgCGu -5'
25568 3' -55.9 NC_005337.1 + 109167 0.74 0.480683
Target:  5'- -cGUCCGcgCGCGC-CGCGCCG-CGCGg -3'
miRNA:   3'- cuUAGGCa-GUGCGaGUGCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 54004 0.74 0.490254
Target:  5'- cGGAUCaccgCGUCGCGCaCGCGCaCGUCGCc -3'
miRNA:   3'- -CUUAG----GCAGUGCGaGUGCG-GCAGCGu -5'
25568 3' -55.9 NC_005337.1 + 82985 0.73 0.499914
Target:  5'- cGAGUUgcUCACGCUCACGCCGgugucCGCc -3'
miRNA:   3'- -CUUAGgcAGUGCGAGUGCGGCa----GCGu -5'
25568 3' -55.9 NC_005337.1 + 94284 0.73 0.508678
Target:  5'- --cUCCGUggccuccUGCGUcaUCACGCCGUCGCGc -3'
miRNA:   3'- cuuAGGCA-------GUGCG--AGUGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 47469 0.73 0.509656
Target:  5'- cGggUCCGUguCGCU---GCCGUCGCGg -3'
miRNA:   3'- -CuuAGGCAguGCGAgugCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 82172 0.73 0.509656
Target:  5'- -cGUCCGUCcCGgUCGCGCCGagGCu -3'
miRNA:   3'- cuUAGGCAGuGCgAGUGCGGCagCGu -5'
25568 3' -55.9 NC_005337.1 + 4741 0.72 0.549363
Target:  5'- aGAUCaCGg-ACGCUCGCGCCGcgCGCGa -3'
miRNA:   3'- cUUAG-GCagUGCGAGUGCGGCa-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 88032 0.72 0.57976
Target:  5'- -cAUCCagGUCACGCUCgccACGCUGaUCGCGu -3'
miRNA:   3'- cuUAGG--CAGUGCGAG---UGCGGC-AGCGU- -5'
25568 3' -55.9 NC_005337.1 + 118794 0.72 0.57976
Target:  5'- cGGcgCCGUCGugcCGCgCGCGCCGUCGg- -3'
miRNA:   3'- -CUuaGGCAGU---GCGaGUGCGGCAGCgu -5'
25568 3' -55.9 NC_005337.1 + 11447 0.72 0.57976
Target:  5'- --cUCCGUCACGaUCACGCgGaCGCGc -3'
miRNA:   3'- cuuAGGCAGUGCgAGUGCGgCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 126202 0.72 0.589977
Target:  5'- ---gCCGUCGCGCgUCcuCGCgGUCGCGg -3'
miRNA:   3'- cuuaGGCAGUGCG-AGu-GCGgCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 48092 0.71 0.610498
Target:  5'- ---gUCGUCACGgaCGCGCCGgagCGCu -3'
miRNA:   3'- cuuaGGCAGUGCgaGUGCGGCa--GCGu -5'
25568 3' -55.9 NC_005337.1 + 95734 0.71 0.610498
Target:  5'- aGAUCCGgagCGCGUUCcCGCCGU-GCAc -3'
miRNA:   3'- cUUAGGCa--GUGCGAGuGCGGCAgCGU- -5'
25568 3' -55.9 NC_005337.1 + 16567 0.71 0.620786
Target:  5'- ---aCCGUCuucACGUUCACGCUGUggaCGCAg -3'
miRNA:   3'- cuuaGGCAG---UGCGAGUGCGGCA---GCGU- -5'
25568 3' -55.9 NC_005337.1 + 118182 0.71 0.651673
Target:  5'- cGGAcCCGUUcgaGCUCGCGCCGgugggCGCGg -3'
miRNA:   3'- -CUUaGGCAGug-CGAGUGCGGCa----GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.