miRNA display CGI


Results 21 - 40 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 3' -55.9 NC_005337.1 + 20133 0.66 0.887386
Target:  5'- aGAggUCGgcgaaggCGCGCUcCACGCUGcCGCAg -3'
miRNA:   3'- -CUuaGGCa------GUGCGA-GUGCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 46454 0.66 0.887386
Target:  5'- cGAUCUG-CGCGCggCGCGCCGgcgaGCu -3'
miRNA:   3'- cUUAGGCaGUGCGa-GUGCGGCag--CGu -5'
25568 3' -55.9 NC_005337.1 + 82565 0.66 0.887386
Target:  5'- cGAUCaucaGCGCgu-CGCCGUCGCAg -3'
miRNA:   3'- cUUAGgcagUGCGaguGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 50943 0.66 0.887386
Target:  5'- ---cCCGggGCGcCUCGCGCCG-CGCc -3'
miRNA:   3'- cuuaGGCagUGC-GAGUGCGGCaGCGu -5'
25568 3' -55.9 NC_005337.1 + 17036 0.66 0.880388
Target:  5'- --cUgCGUCGCGUUcCGCGCgGUCuGCAc -3'
miRNA:   3'- cuuAgGCAGUGCGA-GUGCGgCAG-CGU- -5'
25568 3' -55.9 NC_005337.1 + 128365 0.66 0.880388
Target:  5'- ---cCCGcUCGCGCUCGCGaUC-UCGCGa -3'
miRNA:   3'- cuuaGGC-AGUGCGAGUGC-GGcAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 23048 0.66 0.880388
Target:  5'- -cGUUCGUgacgCACGCcgCGCGCCGgaaCGCGg -3'
miRNA:   3'- cuUAGGCA----GUGCGa-GUGCGGCa--GCGU- -5'
25568 3' -55.9 NC_005337.1 + 87686 0.66 0.880388
Target:  5'- ---aCCGUCAUGUUCAgGUCGagGCc -3'
miRNA:   3'- cuuaGGCAGUGCGAGUgCGGCagCGu -5'
25568 3' -55.9 NC_005337.1 + 78137 0.66 0.880388
Target:  5'- ---gCCGcCcCGCUgCACGCCG-CGCAc -3'
miRNA:   3'- cuuaGGCaGuGCGA-GUGCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 132103 0.66 0.873166
Target:  5'- ---gCCGUgCGCGUcgGCGCCGUgCGCGg -3'
miRNA:   3'- cuuaGGCA-GUGCGagUGCGGCA-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 80141 0.66 0.873166
Target:  5'- aGAG-CCaugCGCGCggCGCgGCCGUCGCGc -3'
miRNA:   3'- -CUUaGGca-GUGCGa-GUG-CGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 16152 0.66 0.873166
Target:  5'- ----aCGUCgaaguaGCGCUCGCGCCG-CGUu -3'
miRNA:   3'- cuuagGCAG------UGCGAGUGCGGCaGCGu -5'
25568 3' -55.9 NC_005337.1 + 30705 0.66 0.873166
Target:  5'- ---cCCGUCGCGgaaCUC-CGCCGggaagUCGCAg -3'
miRNA:   3'- cuuaGGCAGUGC---GAGuGCGGC-----AGCGU- -5'
25568 3' -55.9 NC_005337.1 + 46653 0.67 0.865725
Target:  5'- cGAGUCgGggcugCGCGCgaUCGCGCagcaGUCGCc -3'
miRNA:   3'- -CUUAGgCa----GUGCG--AGUGCGg---CAGCGu -5'
25568 3' -55.9 NC_005337.1 + 58697 0.67 0.865725
Target:  5'- cGGUCaGUCGCG-UCAuCGCCGUCgGCAg -3'
miRNA:   3'- cUUAGgCAGUGCgAGU-GCGGCAG-CGU- -5'
25568 3' -55.9 NC_005337.1 + 19783 0.67 0.858072
Target:  5'- cGAcgCCG-CugGaCUCgGCGUCGUCGUAg -3'
miRNA:   3'- -CUuaGGCaGugC-GAG-UGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 91420 0.67 0.858072
Target:  5'- --cUUCGUCACGCagGCGuCCGUCa-- -3'
miRNA:   3'- cuuAGGCAGUGCGagUGC-GGCAGcgu -5'
25568 3' -55.9 NC_005337.1 + 123838 0.67 0.858072
Target:  5'- --cUCCGUCccgGCGUUCGCGgCGU-GCAu -3'
miRNA:   3'- cuuAGGCAG---UGCGAGUGCgGCAgCGU- -5'
25568 3' -55.9 NC_005337.1 + 3016 0.67 0.850212
Target:  5'- --cUCCGgcaGCGCgugCGCGCCGaugugCGCGa -3'
miRNA:   3'- cuuAGGCag-UGCGa--GUGCGGCa----GCGU- -5'
25568 3' -55.9 NC_005337.1 + 75177 0.67 0.850212
Target:  5'- ---cUCGUCGC-CUCGCGCgCGUcCGCGg -3'
miRNA:   3'- cuuaGGCAGUGcGAGUGCG-GCA-GCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.