miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 3' -55.9 NC_005337.1 + 104559 0.67 0.850212
Target:  5'- ---aCCGcgCGCGCgugCGCGCC-UCGCGc -3'
miRNA:   3'- cuuaGGCa-GUGCGa--GUGCGGcAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 103810 0.67 0.850212
Target:  5'- ---aCCGUCGCGCUCAUGuCCuUCaaggGCAu -3'
miRNA:   3'- cuuaGGCAGUGCGAGUGC-GGcAG----CGU- -5'
25568 3' -55.9 NC_005337.1 + 75177 0.67 0.850212
Target:  5'- ---cUCGUCGC-CUCGCGCgCGUcCGCGg -3'
miRNA:   3'- cuuaGGCAGUGcGAGUGCG-GCA-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 3016 0.67 0.850212
Target:  5'- --cUCCGgcaGCGCgugCGCGCCGaugugCGCGa -3'
miRNA:   3'- cuuAGGCag-UGCGa--GUGCGGCa----GCGU- -5'
25568 3' -55.9 NC_005337.1 + 12150 0.67 0.8454
Target:  5'- ---aCCGUaCACGUUCaucgcguugauguccGCGCCGUgCGCGa -3'
miRNA:   3'- cuuaGGCA-GUGCGAG---------------UGCGGCA-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 49612 0.67 0.842152
Target:  5'- -cGUCCGacgaccagaUCACGCggACGuuGUCGCu -3'
miRNA:   3'- cuUAGGC---------AGUGCGagUGCggCAGCGu -5'
25568 3' -55.9 NC_005337.1 + 118928 0.67 0.842152
Target:  5'- uGGAagCGUCGCGCggGCGCagcgugCGUCGCGc -3'
miRNA:   3'- -CUUagGCAGUGCGagUGCG------GCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 88504 0.67 0.842152
Target:  5'- ---gCCGUCAUGgaCAgCGCCG-CGCGg -3'
miRNA:   3'- cuuaGGCAGUGCgaGU-GCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 24800 0.67 0.833898
Target:  5'- aGAUCCGgaagCGCGCcCACGCgCGcaCGCAc -3'
miRNA:   3'- cUUAGGCa---GUGCGaGUGCG-GCa-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 49674 0.67 0.825459
Target:  5'- -cAUCCGUCGCGUguagCGCGCCuugaGCu -3'
miRNA:   3'- cuUAGGCAGUGCGa---GUGCGGcag-CGu -5'
25568 3' -55.9 NC_005337.1 + 82172 0.68 0.816842
Target:  5'- ---cCCGUCGCGCaccugCACGCgGcCGCc -3'
miRNA:   3'- cuuaGGCAGUGCGa----GUGCGgCaGCGu -5'
25568 3' -55.9 NC_005337.1 + 109254 0.68 0.816842
Target:  5'- -uGUCCGcCGCGCgCACGUCGaaGCGg -3'
miRNA:   3'- cuUAGGCaGUGCGaGUGCGGCagCGU- -5'
25568 3' -55.9 NC_005337.1 + 63465 0.68 0.799105
Target:  5'- uGGAUgUCGUCgaugACGCUCACcaGCCGcCGCAu -3'
miRNA:   3'- -CUUA-GGCAG----UGCGAGUG--CGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 119404 0.68 0.799105
Target:  5'- gGAGUCgCGUCGgaaGuCUCGC-CCGUCGCGc -3'
miRNA:   3'- -CUUAG-GCAGUg--C-GAGUGcGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 80357 0.68 0.790004
Target:  5'- uGAA-CCagcaCGCGUUCGCGCCgGUCGCGg -3'
miRNA:   3'- -CUUaGGca--GUGCGAGUGCGG-CAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 6891 0.68 0.790004
Target:  5'- -cGUCCauGUCGCGCgcgcgcgggucCGCGCCGgcgCGCAg -3'
miRNA:   3'- cuUAGG--CAGUGCGa----------GUGCGGCa--GCGU- -5'
25568 3' -55.9 NC_005337.1 + 98049 0.68 0.780758
Target:  5'- -cGUCCGggagCGCGC-CGCGgCCGgCGCAa -3'
miRNA:   3'- cuUAGGCa---GUGCGaGUGC-GGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 101237 0.68 0.780758
Target:  5'- -cGUCCGcgCGCguGCUCGCGCUGgacggCGCGg -3'
miRNA:   3'- cuUAGGCa-GUG--CGAGUGCGGCa----GCGU- -5'
25568 3' -55.9 NC_005337.1 + 98835 0.69 0.771378
Target:  5'- ---gCgGUCGCGCccacCGCGCCGUgCGCGu -3'
miRNA:   3'- cuuaGgCAGUGCGa---GUGCGGCA-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 12354 0.69 0.771378
Target:  5'- -cGUCCGUC-CGCggacgUCGCgGCgCGUCGCGa -3'
miRNA:   3'- cuUAGGCAGuGCG-----AGUG-CG-GCAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.