miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 3' -55.9 NC_005337.1 + 27419 0.67 0.850212
Target:  5'- --cUCCGcaaagCACGCgccCGgGUCGUCGCAg -3'
miRNA:   3'- cuuAGGCa----GUGCGa--GUgCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 28241 0.66 0.906997
Target:  5'- cGAAacgCCGUCGCGCggcaccaCGCGCaCGUgCGUg -3'
miRNA:   3'- -CUUa--GGCAGUGCGa------GUGCG-GCA-GCGu -5'
25568 3' -55.9 NC_005337.1 + 28486 0.69 0.732691
Target:  5'- cGGAUgCGgcCGCGCggCGCGCgGUCGCGc -3'
miRNA:   3'- -CUUAgGCa-GUGCGa-GUGCGgCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 30705 0.66 0.873166
Target:  5'- ---cCCGUCGCGgaaCUC-CGCCGggaagUCGCAg -3'
miRNA:   3'- cuuaGGCAGUGC---GAGuGCGGC-----AGCGU- -5'
25568 3' -55.9 NC_005337.1 + 34053 0.67 0.850212
Target:  5'- cGAUCaCGcgCACGCggCGCcgGCCGUCGUAg -3'
miRNA:   3'- cUUAG-GCa-GUGCGa-GUG--CGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 38078 0.66 0.894156
Target:  5'- cGggUCCGUgggcgccacCACGCUCAUGUacaUCGUg -3'
miRNA:   3'- -CuuAGGCA---------GUGCGAGUGCGgc-AGCGu -5'
25568 3' -55.9 NC_005337.1 + 38890 0.74 0.471203
Target:  5'- gGAGUUCG-CGCGCgucgCGCgGCCGUCGCu -3'
miRNA:   3'- -CUUAGGCaGUGCGa---GUG-CGGCAGCGu -5'
25568 3' -55.9 NC_005337.1 + 40240 0.66 0.894156
Target:  5'- -cGUCgGcCGCGC-CGCGCCG-CGCc -3'
miRNA:   3'- cuUAGgCaGUGCGaGUGCGGCaGCGu -5'
25568 3' -55.9 NC_005337.1 + 44982 0.66 0.894156
Target:  5'- --cUCCaaCACGCUCGcCGCCGUCc-- -3'
miRNA:   3'- cuuAGGcaGUGCGAGU-GCGGCAGcgu -5'
25568 3' -55.9 NC_005337.1 + 46454 0.66 0.887386
Target:  5'- cGAUCUG-CGCGCggCGCGCCGgcgaGCu -3'
miRNA:   3'- cUUAGGCaGUGCGa-GUGCGGCag--CGu -5'
25568 3' -55.9 NC_005337.1 + 46653 0.67 0.865725
Target:  5'- cGAGUCgGggcugCGCGCgaUCGCGCagcaGUCGCc -3'
miRNA:   3'- -CUUAGgCa----GUGCG--AGUGCGg---CAGCGu -5'
25568 3' -55.9 NC_005337.1 + 47469 0.73 0.509656
Target:  5'- cGggUCCGUguCGCU---GCCGUCGCGg -3'
miRNA:   3'- -CuuAGGCAguGCGAgugCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 48092 0.71 0.610498
Target:  5'- ---gUCGUCACGgaCGCGCCGgagCGCu -3'
miRNA:   3'- cuuaGGCAGUGCgaGUGCGGCa--GCGu -5'
25568 3' -55.9 NC_005337.1 + 49612 0.67 0.842152
Target:  5'- -cGUCCGacgaccagaUCACGCggACGuuGUCGCu -3'
miRNA:   3'- cuUAGGC---------AGUGCGagUGCggCAGCGu -5'
25568 3' -55.9 NC_005337.1 + 49674 0.67 0.825459
Target:  5'- -cAUCCGUCGCGUguagCGCGCCuugaGCu -3'
miRNA:   3'- cuUAGGCAGUGCGa---GUGCGGcag-CGu -5'
25568 3' -55.9 NC_005337.1 + 50943 0.66 0.887386
Target:  5'- ---cCCGggGCGcCUCGCGCCG-CGCc -3'
miRNA:   3'- cuuaGGCagUGC-GAGUGCGGCaGCGu -5'
25568 3' -55.9 NC_005337.1 + 53599 0.66 0.906997
Target:  5'- -cAUgCG-CGCGCggaagCGCGCCG-CGCAg -3'
miRNA:   3'- cuUAgGCaGUGCGa----GUGCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 54004 0.74 0.490254
Target:  5'- cGGAUCaccgCGUCGCGCaCGCGCaCGUCGCc -3'
miRNA:   3'- -CUUAG----GCAGUGCGaGUGCG-GCAGCGu -5'
25568 3' -55.9 NC_005337.1 + 56596 0.66 0.887386
Target:  5'- cGAGUUCGUCGacCGCUucCugGCCuUCGCc -3'
miRNA:   3'- -CUUAGGCAGU--GCGA--GugCGGcAGCGu -5'
25568 3' -55.9 NC_005337.1 + 58697 0.67 0.865725
Target:  5'- cGGUCaGUCGCG-UCAuCGCCGUCgGCAg -3'
miRNA:   3'- cUUAGgCAGUGCgAGU-GCGGCAG-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.