miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 3' -55.9 NC_005337.1 + 58858 0.7 0.692591
Target:  5'- --cUUCG-CGCGCUCgcGCGCCGUcCGCGc -3'
miRNA:   3'- cuuAGGCaGUGCGAG--UGCGGCA-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 61844 0.74 0.480683
Target:  5'- -cGUCgCGgagCACGCUCACGCCGU-GCu -3'
miRNA:   3'- cuUAG-GCa--GUGCGAGUGCGGCAgCGu -5'
25568 3' -55.9 NC_005337.1 + 63465 0.68 0.799105
Target:  5'- uGGAUgUCGUCgaugACGCUCACcaGCCGcCGCAu -3'
miRNA:   3'- -CUUA-GGCAG----UGCGAGUG--CGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 65735 0.66 0.906997
Target:  5'- cGGcgCCGUCacuagcgcggcACGCUCAgaGCCGagCGCGg -3'
miRNA:   3'- -CUuaGGCAG-----------UGCGAGUg-CGGCa-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 67971 0.66 0.906997
Target:  5'- ---aCCGcgGCGCUCACGCgGUC-CAg -3'
miRNA:   3'- cuuaGGCagUGCGAGUGCGgCAGcGU- -5'
25568 3' -55.9 NC_005337.1 + 72363 0.69 0.732691
Target:  5'- --uUCCGcgcgaUCGCGCggACgGCCGUCGCGg -3'
miRNA:   3'- cuuAGGC-----AGUGCGagUG-CGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 74573 0.7 0.702716
Target:  5'- ---gCCGcgcggCACGCggaCGCGCUGUCGCGc -3'
miRNA:   3'- cuuaGGCa----GUGCGa--GUGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 75177 0.67 0.850212
Target:  5'- ---cUCGUCGC-CUCGCGCgCGUcCGCGg -3'
miRNA:   3'- cuuaGGCAGUGcGAGUGCG-GCA-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 78137 0.66 0.880388
Target:  5'- ---gCCGcCcCGCUgCACGCCG-CGCAc -3'
miRNA:   3'- cuuaGGCaGuGCGA-GUGCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 78543 0.71 0.651673
Target:  5'- uGGAcCCGUaCACGggCGCGCCGUgCGCGu -3'
miRNA:   3'- -CUUaGGCA-GUGCgaGUGCGGCA-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 80141 0.66 0.873166
Target:  5'- aGAG-CCaugCGCGCggCGCgGCCGUCGCGc -3'
miRNA:   3'- -CUUaGGca-GUGCGa-GUG-CGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 80357 0.68 0.790004
Target:  5'- uGAA-CCagcaCGCGUUCGCGCCgGUCGCGg -3'
miRNA:   3'- -CUUaGGca--GUGCGAGUGCGG-CAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 81730 0.7 0.71278
Target:  5'- ---gUCGuUCAgGCUCugGCUGUCGCc -3'
miRNA:   3'- cuuaGGC-AGUgCGAGugCGGCAGCGu -5'
25568 3' -55.9 NC_005337.1 + 82172 0.68 0.816842
Target:  5'- ---cCCGUCGCGCaccugCACGCgGcCGCc -3'
miRNA:   3'- cuuaGGCAGUGCGa----GUGCGgCaGCGu -5'
25568 3' -55.9 NC_005337.1 + 82172 0.73 0.509656
Target:  5'- -cGUCCGUCcCGgUCGCGCCGagGCu -3'
miRNA:   3'- cuUAGGCAGuGCgAGUGCGGCagCGu -5'
25568 3' -55.9 NC_005337.1 + 82565 0.66 0.887386
Target:  5'- cGAUCaucaGCGCgu-CGCCGUCGCAg -3'
miRNA:   3'- cUUAGgcagUGCGaguGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 82985 0.73 0.499914
Target:  5'- cGAGUUgcUCACGCUCACGCCGgugucCGCc -3'
miRNA:   3'- -CUUAGgcAGUGCGAGUGCGGCa----GCGu -5'
25568 3' -55.9 NC_005337.1 + 87686 0.66 0.880388
Target:  5'- ---aCCGUCAUGUUCAgGUCGagGCc -3'
miRNA:   3'- cuuaGGCAGUGCGAGUgCGGCagCGu -5'
25568 3' -55.9 NC_005337.1 + 88032 0.72 0.57976
Target:  5'- -cAUCCagGUCACGCUCgccACGCUGaUCGCGu -3'
miRNA:   3'- cuUAGG--CAGUGCGAG---UGCGGC-AGCGU- -5'
25568 3' -55.9 NC_005337.1 + 88504 0.67 0.842152
Target:  5'- ---gCCGUCAUGgaCAgCGCCG-CGCGg -3'
miRNA:   3'- cuuaGGCAGUGCgaGU-GCGGCaGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.