miRNA display CGI


Results 61 - 80 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 3' -55.9 NC_005337.1 + 90406 0.71 0.651673
Target:  5'- -cAUCUc-CGCGUcCACGCCGUCGCAg -3'
miRNA:   3'- cuUAGGcaGUGCGaGUGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 91420 0.67 0.858072
Target:  5'- --cUUCGUCACGCagGCGuCCGUCa-- -3'
miRNA:   3'- cuuAGGCAGUGCGagUGC-GGCAGcgu -5'
25568 3' -55.9 NC_005337.1 + 94284 0.73 0.508678
Target:  5'- --cUCCGUggccuccUGCGUcaUCACGCCGUCGCGc -3'
miRNA:   3'- cuuAGGCA-------GUGCG--AGUGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 95296 0.79 0.246413
Target:  5'- cGAGUCCGUaggCGCGCggCGCGCUGUUGCGc -3'
miRNA:   3'- -CUUAGGCA---GUGCGa-GUGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 95734 0.71 0.610498
Target:  5'- aGAUCCGgagCGCGUUCcCGCCGU-GCAc -3'
miRNA:   3'- cUUAGGCa--GUGCGAGuGCGGCAgCGU- -5'
25568 3' -55.9 NC_005337.1 + 97771 0.66 0.900694
Target:  5'- aGGAU-CGUCGCGCcgaGCGCCGcggcCGCGg -3'
miRNA:   3'- -CUUAgGCAGUGCGag-UGCGGCa---GCGU- -5'
25568 3' -55.9 NC_005337.1 + 98049 0.68 0.780758
Target:  5'- -cGUCCGggagCGCGC-CGCGgCCGgCGCAa -3'
miRNA:   3'- cuUAGGCa---GUGCGaGUGC-GGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 98501 0.69 0.742518
Target:  5'- -cGUCCGUCAUGacaCGCGCCacgaucccgGUCGCGc -3'
miRNA:   3'- cuUAGGCAGUGCga-GUGCGG---------CAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 98716 0.66 0.906997
Target:  5'- -cAUCCGcUCGCGCg-GCGCCcugCGCGu -3'
miRNA:   3'- cuUAGGC-AGUGCGagUGCGGca-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 98835 0.69 0.771378
Target:  5'- ---gCgGUCGCGCccacCGCGCCGUgCGCGu -3'
miRNA:   3'- cuuaGgCAGUGCGa---GUGCGGCA-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 99049 1.09 0.002709
Target:  5'- cGAAUCCGUCACGCUCACGCCGUCGCAg -3'
miRNA:   3'- -CUUAGGCAGUGCGAGUGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 100674 0.69 0.722775
Target:  5'- ----aCGcCGCGUUCGCGCCG-CGCGc -3'
miRNA:   3'- cuuagGCaGUGCGAGUGCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 100988 0.69 0.732691
Target:  5'- --cUUCGUCugGCUCGuCGCCacgcUCGCGg -3'
miRNA:   3'- cuuAGGCAGugCGAGU-GCGGc---AGCGU- -5'
25568 3' -55.9 NC_005337.1 + 101237 0.68 0.780758
Target:  5'- -cGUCCGcgCGCguGCUCGCGCUGgacggCGCGg -3'
miRNA:   3'- cuUAGGCa-GUG--CGAGUGCGGCa----GCGU- -5'
25568 3' -55.9 NC_005337.1 + 101489 0.66 0.894156
Target:  5'- aGGcgCUGcUCGCGCUCAUGCgCGagCGCu -3'
miRNA:   3'- -CUuaGGC-AGUGCGAGUGCG-GCa-GCGu -5'
25568 3' -55.9 NC_005337.1 + 102835 0.66 0.894156
Target:  5'- aGAcgCgCGUCAUGgUCGgGCCG-CGCGc -3'
miRNA:   3'- -CUuaG-GCAGUGCgAGUgCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 103361 0.69 0.752248
Target:  5'- cGAGUCCaucggCGCaggGCUCGCcuGCCGUCGCu -3'
miRNA:   3'- -CUUAGGca---GUG---CGAGUG--CGGCAGCGu -5'
25568 3' -55.9 NC_005337.1 + 103810 0.67 0.850212
Target:  5'- ---aCCGUCGCGCUCAUGuCCuUCaaggGCAu -3'
miRNA:   3'- cuuaGGCAGUGCGAGUGC-GGcAG----CGU- -5'
25568 3' -55.9 NC_005337.1 + 104559 0.67 0.850212
Target:  5'- ---aCCGcgCGCGCgugCGCGCC-UCGCGc -3'
miRNA:   3'- cuuaGGCa-GUGCGa--GUGCGGcAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 105781 0.69 0.761871
Target:  5'- ---gCCG-CGCGCcgCGCGCCG-CGCGg -3'
miRNA:   3'- cuuaGGCaGUGCGa-GUGCGGCaGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.