miRNA display CGI


Results 81 - 99 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 3' -55.9 NC_005337.1 + 108839 0.69 0.722775
Target:  5'- ---gCCGaagCGCGCgggcgaCACGCCGUCGUg -3'
miRNA:   3'- cuuaGGCa--GUGCGa-----GUGCGGCAGCGu -5'
25568 3' -55.9 NC_005337.1 + 109167 0.74 0.480683
Target:  5'- -cGUCCGcgCGCGC-CGCGCCG-CGCGg -3'
miRNA:   3'- cuUAGGCa-GUGCGaGUGCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 109254 0.68 0.816842
Target:  5'- -uGUCCGcCGCGCgCACGUCGaaGCGg -3'
miRNA:   3'- cuUAGGCaGUGCGaGUGCGGCagCGU- -5'
25568 3' -55.9 NC_005337.1 + 111365 0.66 0.894156
Target:  5'- gGAcgCUGUCGCugaagaGCUCGCgguGCCGcUCGCGc -3'
miRNA:   3'- -CUuaGGCAGUG------CGAGUG---CGGC-AGCGU- -5'
25568 3' -55.9 NC_005337.1 + 118182 0.71 0.651673
Target:  5'- cGGAcCCGUUcgaGCUCGCGCCGgugggCGCGg -3'
miRNA:   3'- -CUUaGGCAGug-CGAGUGCGGCa----GCGU- -5'
25568 3' -55.9 NC_005337.1 + 118794 0.72 0.57976
Target:  5'- cGGcgCCGUCGugcCGCgCGCGCCGUCGg- -3'
miRNA:   3'- -CUuaGGCAGU---GCGaGUGCGGCAGCgu -5'
25568 3' -55.9 NC_005337.1 + 118928 0.67 0.842152
Target:  5'- uGGAagCGUCGCGCggGCGCagcgugCGUCGCGc -3'
miRNA:   3'- -CUUagGCAGUGCGagUGCG------GCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 119404 0.68 0.799105
Target:  5'- gGAGUCgCGUCGgaaGuCUCGC-CCGUCGCGc -3'
miRNA:   3'- -CUUAG-GCAGUg--C-GAGUGcGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 121492 0.66 0.900694
Target:  5'- -cAUCUG-CGgGUUCACGCCGcUGCAc -3'
miRNA:   3'- cuUAGGCaGUgCGAGUGCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 123838 0.67 0.858072
Target:  5'- --cUCCGUCccgGCGUUCGCGgCGU-GCAu -3'
miRNA:   3'- cuuAGGCAG---UGCGAGUGCgGCAgCGU- -5'
25568 3' -55.9 NC_005337.1 + 126202 0.72 0.589977
Target:  5'- ---gCCGUCGCGCgUCcuCGCgGUCGCGg -3'
miRNA:   3'- cuuaGGCAGUGCG-AGu-GCGgCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 127452 0.66 0.900694
Target:  5'- gGAAUCCaUCAUGCgCACGCuCGUgGaCAg -3'
miRNA:   3'- -CUUAGGcAGUGCGaGUGCG-GCAgC-GU- -5'
25568 3' -55.9 NC_005337.1 + 128306 0.7 0.682416
Target:  5'- uGGcgCCGUC-UGCUCGCGCgCGgCGCGa -3'
miRNA:   3'- -CUuaGGCAGuGCGAGUGCG-GCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 128365 0.66 0.880388
Target:  5'- ---cCCGcUCGCGCUCGCGaUC-UCGCGa -3'
miRNA:   3'- cuuaGGC-AGUGCGAGUGC-GGcAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 129070 0.69 0.761871
Target:  5'- aGAggUgGUCGCGCUgCugGCCGagggCGCAg -3'
miRNA:   3'- -CUuaGgCAGUGCGA-GugCGGCa---GCGU- -5'
25568 3' -55.9 NC_005337.1 + 131558 0.66 0.906997
Target:  5'- gGAcgUCGUCGCGCUCGUGCUccucCGCGu -3'
miRNA:   3'- -CUuaGGCAGUGCGAGUGCGGca--GCGU- -5'
25568 3' -55.9 NC_005337.1 + 132103 0.66 0.873166
Target:  5'- ---gCCGUgCGCGUcgGCGCCGUgCGCGg -3'
miRNA:   3'- cuuaGGCA-GUGCGagUGCGGCA-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 133648 0.66 0.900694
Target:  5'- gGAcgUCGcCGCGCUgGaCGCCGaCGCGg -3'
miRNA:   3'- -CUuaGGCaGUGCGAgU-GCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 133648 0.66 0.900694
Target:  5'- gGAcgUCGcCGCGCUgGaCGCCGaCGCGg -3'
miRNA:   3'- -CUuaGGCaGUGCGAgU-GCGGCaGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.