Results 41 - 60 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25568 | 3' | -55.9 | NC_005337.1 | + | 88032 | 0.72 | 0.57976 |
Target: 5'- -cAUCCagGUCACGCUCgccACGCUGaUCGCGu -3' miRNA: 3'- cuUAGG--CAGUGCGAG---UGCGGC-AGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 87686 | 0.66 | 0.880388 |
Target: 5'- ---aCCGUCAUGUUCAgGUCGagGCc -3' miRNA: 3'- cuuaGGCAGUGCGAGUgCGGCagCGu -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 82985 | 0.73 | 0.499914 |
Target: 5'- cGAGUUgcUCACGCUCACGCCGgugucCGCc -3' miRNA: 3'- -CUUAGgcAGUGCGAGUGCGGCa----GCGu -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 82565 | 0.66 | 0.887386 |
Target: 5'- cGAUCaucaGCGCgu-CGCCGUCGCAg -3' miRNA: 3'- cUUAGgcagUGCGaguGCGGCAGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 82172 | 0.68 | 0.816842 |
Target: 5'- ---cCCGUCGCGCaccugCACGCgGcCGCc -3' miRNA: 3'- cuuaGGCAGUGCGa----GUGCGgCaGCGu -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 82172 | 0.73 | 0.509656 |
Target: 5'- -cGUCCGUCcCGgUCGCGCCGagGCu -3' miRNA: 3'- cuUAGGCAGuGCgAGUGCGGCagCGu -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 81730 | 0.7 | 0.71278 |
Target: 5'- ---gUCGuUCAgGCUCugGCUGUCGCc -3' miRNA: 3'- cuuaGGC-AGUgCGAGugCGGCAGCGu -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 80357 | 0.68 | 0.790004 |
Target: 5'- uGAA-CCagcaCGCGUUCGCGCCgGUCGCGg -3' miRNA: 3'- -CUUaGGca--GUGCGAGUGCGG-CAGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 80141 | 0.66 | 0.873166 |
Target: 5'- aGAG-CCaugCGCGCggCGCgGCCGUCGCGc -3' miRNA: 3'- -CUUaGGca-GUGCGa-GUG-CGGCAGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 78543 | 0.71 | 0.651673 |
Target: 5'- uGGAcCCGUaCACGggCGCGCCGUgCGCGu -3' miRNA: 3'- -CUUaGGCA-GUGCgaGUGCGGCA-GCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 78137 | 0.66 | 0.880388 |
Target: 5'- ---gCCGcCcCGCUgCACGCCG-CGCAc -3' miRNA: 3'- cuuaGGCaGuGCGA-GUGCGGCaGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 75177 | 0.67 | 0.850212 |
Target: 5'- ---cUCGUCGC-CUCGCGCgCGUcCGCGg -3' miRNA: 3'- cuuaGGCAGUGcGAGUGCG-GCA-GCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 74573 | 0.7 | 0.702716 |
Target: 5'- ---gCCGcgcggCACGCggaCGCGCUGUCGCGc -3' miRNA: 3'- cuuaGGCa----GUGCGa--GUGCGGCAGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 72363 | 0.69 | 0.732691 |
Target: 5'- --uUCCGcgcgaUCGCGCggACgGCCGUCGCGg -3' miRNA: 3'- cuuAGGC-----AGUGCGagUG-CGGCAGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 67971 | 0.66 | 0.906997 |
Target: 5'- ---aCCGcgGCGCUCACGCgGUC-CAg -3' miRNA: 3'- cuuaGGCagUGCGAGUGCGgCAGcGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 65735 | 0.66 | 0.906997 |
Target: 5'- cGGcgCCGUCacuagcgcggcACGCUCAgaGCCGagCGCGg -3' miRNA: 3'- -CUuaGGCAG-----------UGCGAGUg-CGGCa-GCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 63465 | 0.68 | 0.799105 |
Target: 5'- uGGAUgUCGUCgaugACGCUCACcaGCCGcCGCAu -3' miRNA: 3'- -CUUA-GGCAG----UGCGAGUG--CGGCaGCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 61844 | 0.74 | 0.480683 |
Target: 5'- -cGUCgCGgagCACGCUCACGCCGU-GCu -3' miRNA: 3'- cuUAG-GCa--GUGCGAGUGCGGCAgCGu -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 58858 | 0.7 | 0.692591 |
Target: 5'- --cUUCG-CGCGCUCgcGCGCCGUcCGCGc -3' miRNA: 3'- cuuAGGCaGUGCGAG--UGCGGCA-GCGU- -5' |
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25568 | 3' | -55.9 | NC_005337.1 | + | 58697 | 0.67 | 0.865725 |
Target: 5'- cGGUCaGUCGCG-UCAuCGCCGUCgGCAg -3' miRNA: 3'- cUUAGgCAGUGCgAGU-GCGGCAG-CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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