miRNA display CGI


Results 81 - 99 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 3' -55.9 NC_005337.1 + 23048 0.66 0.880388
Target:  5'- -cGUUCGUgacgCACGCcgCGCGCCGgaaCGCGg -3'
miRNA:   3'- cuUAGGCA----GUGCGa-GUGCGGCa--GCGU- -5'
25568 3' -55.9 NC_005337.1 + 21923 0.7 0.682416
Target:  5'- gGAGguggCCG-CGCGCUC-CGCCGagcUCGCGg -3'
miRNA:   3'- -CUUa---GGCaGUGCGAGuGCGGC---AGCGU- -5'
25568 3' -55.9 NC_005337.1 + 20133 0.66 0.887386
Target:  5'- aGAggUCGgcgaaggCGCGCUcCACGCUGcCGCAg -3'
miRNA:   3'- -CUuaGGCa------GUGCGA-GUGCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 19783 0.67 0.858072
Target:  5'- cGAcgCCG-CugGaCUCgGCGUCGUCGUAg -3'
miRNA:   3'- -CUuaGGCaGugC-GAG-UGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 17036 0.66 0.880388
Target:  5'- --cUgCGUCGCGUUcCGCGCgGUCuGCAc -3'
miRNA:   3'- cuuAgGCAGUGCGA-GUGCGgCAG-CGU- -5'
25568 3' -55.9 NC_005337.1 + 16567 0.71 0.620786
Target:  5'- ---aCCGUCuucACGUUCACGCUGUggaCGCAg -3'
miRNA:   3'- cuuaGGCAG---UGCGAGUGCGGCA---GCGU- -5'
25568 3' -55.9 NC_005337.1 + 16152 0.66 0.873166
Target:  5'- ----aCGUCgaaguaGCGCUCGCGCCG-CGUu -3'
miRNA:   3'- cuuagGCAG------UGCGAGUGCGGCaGCGu -5'
25568 3' -55.9 NC_005337.1 + 12710 0.66 0.900694
Target:  5'- -cGUCCG-CGCGC--GCGCCG-CGCu -3'
miRNA:   3'- cuUAGGCaGUGCGagUGCGGCaGCGu -5'
25568 3' -55.9 NC_005337.1 + 12354 0.69 0.771378
Target:  5'- -cGUCCGUC-CGCggacgUCGCgGCgCGUCGCGa -3'
miRNA:   3'- cuUAGGCAGuGCG-----AGUG-CG-GCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 12150 0.67 0.8454
Target:  5'- ---aCCGUaCACGUUCaucgcguugauguccGCGCCGUgCGCGa -3'
miRNA:   3'- cuuaGGCA-GUGCGAG---------------UGCGGCA-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 11447 0.72 0.57976
Target:  5'- --cUCCGUCACGaUCACGCgGaCGCGc -3'
miRNA:   3'- cuuAGGCAGUGCgAGUGCGgCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 8317 0.7 0.71278
Target:  5'- --uUCCG-CGCGUUCACGCCcaCGCc -3'
miRNA:   3'- cuuAGGCaGUGCGAGUGCGGcaGCGu -5'
25568 3' -55.9 NC_005337.1 + 7843 0.7 0.672198
Target:  5'- ---gUgGUaCACGCgcacgCGCGCCGUCGCGc -3'
miRNA:   3'- cuuaGgCA-GUGCGa----GUGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 6891 0.68 0.790004
Target:  5'- -cGUCCauGUCGCGCgcgcgcgggucCGCGCCGgcgCGCAg -3'
miRNA:   3'- cuUAGG--CAGUGCGa----------GUGCGGCa--GCGU- -5'
25568 3' -55.9 NC_005337.1 + 6248 0.66 0.900694
Target:  5'- cGAGUCagCGUCgcugACGCUgGCGCCGgCGUc -3'
miRNA:   3'- -CUUAG--GCAG----UGCGAgUGCGGCaGCGu -5'
25568 3' -55.9 NC_005337.1 + 5958 0.77 0.312237
Target:  5'- -----aGUCGCGCUCGCGCCGcgCGCGa -3'
miRNA:   3'- cuuaggCAGUGCGAGUGCGGCa-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 4741 0.72 0.549363
Target:  5'- aGAUCaCGg-ACGCUCGCGCCGcgCGCGa -3'
miRNA:   3'- cUUAG-GCagUGCGAGUGCGGCa-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 3016 0.67 0.850212
Target:  5'- --cUCCGgcaGCGCgugCGCGCCGaugugCGCGa -3'
miRNA:   3'- cuuAGGCag-UGCGa--GUGCGGCa----GCGU- -5'
25568 3' -55.9 NC_005337.1 + 2078 0.69 0.726751
Target:  5'- -uGUCCGcgagCGCGCUCgACGCCagcgccagcgccuccGUCGCGu -3'
miRNA:   3'- cuUAGGCa---GUGCGAG-UGCGG---------------CAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.