miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 3' -55.9 NC_005337.1 + 6891 0.68 0.790004
Target:  5'- -cGUCCauGUCGCGCgcgcgcgggucCGCGCCGgcgCGCAg -3'
miRNA:   3'- cuUAGG--CAGUGCGa----------GUGCGGCa--GCGU- -5'
25568 3' -55.9 NC_005337.1 + 101237 0.68 0.780758
Target:  5'- -cGUCCGcgCGCguGCUCGCGCUGgacggCGCGg -3'
miRNA:   3'- cuUAGGCa-GUG--CGAGUGCGGCa----GCGU- -5'
25568 3' -55.9 NC_005337.1 + 128306 0.7 0.682416
Target:  5'- uGGcgCCGUC-UGCUCGCGCgCGgCGCGa -3'
miRNA:   3'- -CUuaGGCAGuGCGAGUGCG-GCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 21923 0.7 0.682416
Target:  5'- gGAGguggCCG-CGCGCUC-CGCCGagcUCGCGg -3'
miRNA:   3'- -CUUa---GGCaGUGCGAGuGCGGC---AGCGU- -5'
25568 3' -55.9 NC_005337.1 + 118182 0.71 0.651673
Target:  5'- cGGAcCCGUUcgaGCUCGCGCCGgugggCGCGg -3'
miRNA:   3'- -CUUaGGCAGug-CGAGUGCGGCa----GCGU- -5'
25568 3' -55.9 NC_005337.1 + 11447 0.72 0.57976
Target:  5'- --cUCCGUCACGaUCACGCgGaCGCGc -3'
miRNA:   3'- cuuAGGCAGUGCgAGUGCGgCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 82172 0.73 0.509656
Target:  5'- -cGUCCGUCcCGgUCGCGCCGagGCu -3'
miRNA:   3'- cuUAGGCAGuGCgAGUGCGGCagCGu -5'
25568 3' -55.9 NC_005337.1 + 47469 0.73 0.509656
Target:  5'- cGggUCCGUguCGCU---GCCGUCGCGg -3'
miRNA:   3'- -CuuAGGCAguGCGAgugCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 82985 0.73 0.499914
Target:  5'- cGAGUUgcUCACGCUCACGCCGgugucCGCc -3'
miRNA:   3'- -CUUAGgcAGUGCGAGUGCGGCa----GCGu -5'
25568 3' -55.9 NC_005337.1 + 54004 0.74 0.490254
Target:  5'- cGGAUCaccgCGUCGCGCaCGCGCaCGUCGCc -3'
miRNA:   3'- -CUUAG----GCAGUGCGaGUGCG-GCAGCGu -5'
25568 3' -55.9 NC_005337.1 + 58858 0.7 0.692591
Target:  5'- --cUUCG-CGCGCUCgcGCGCCGUcCGCGc -3'
miRNA:   3'- cuuAGGCaGUGCGAG--UGCGGCA-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 74573 0.7 0.702716
Target:  5'- ---gCCGcgcggCACGCggaCGCGCUGUCGCGc -3'
miRNA:   3'- cuuaGGCa----GUGCGa--GUGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 98049 0.68 0.780758
Target:  5'- -cGUCCGggagCGCGC-CGCGgCCGgCGCAa -3'
miRNA:   3'- cuUAGGCa---GUGCGaGUGC-GGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 98835 0.69 0.771378
Target:  5'- ---gCgGUCGCGCccacCGCGCCGUgCGCGu -3'
miRNA:   3'- cuuaGgCAGUGCGa---GUGCGGCA-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 129070 0.69 0.761871
Target:  5'- aGAggUgGUCGCGCUgCugGCCGagggCGCAg -3'
miRNA:   3'- -CUuaGgCAGUGCGA-GugCGGCa---GCGU- -5'
25568 3' -55.9 NC_005337.1 + 98501 0.69 0.742518
Target:  5'- -cGUCCGUCAUGacaCGCGCCacgaucccgGUCGCGc -3'
miRNA:   3'- cuUAGGCAGUGCga-GUGCGG---------CAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 28486 0.69 0.732691
Target:  5'- cGGAUgCGgcCGCGCggCGCGCgGUCGCGc -3'
miRNA:   3'- -CUUAgGCa-GUGCGa-GUGCGgCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 100674 0.69 0.722775
Target:  5'- ----aCGcCGCGUUCGCGCCG-CGCGc -3'
miRNA:   3'- cuuagGCaGUGCGAGUGCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 108839 0.69 0.722775
Target:  5'- ---gCCGaagCGCGCgggcgaCACGCCGUCGUg -3'
miRNA:   3'- cuuaGGCa--GUGCGa-----GUGCGGCAGCGu -5'
25568 3' -55.9 NC_005337.1 + 81730 0.7 0.71278
Target:  5'- ---gUCGuUCAgGCUCugGCUGUCGCc -3'
miRNA:   3'- cuuaGGC-AGUgCGAGugCGGCAGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.