miRNA display CGI


Results 61 - 80 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 3' -55.9 NC_005337.1 + 46653 0.67 0.865725
Target:  5'- cGAGUCgGggcugCGCGCgaUCGCGCagcaGUCGCc -3'
miRNA:   3'- -CUUAGgCa----GUGCG--AGUGCGg---CAGCGu -5'
25568 3' -55.9 NC_005337.1 + 16152 0.66 0.873166
Target:  5'- ----aCGUCgaaguaGCGCUCGCGCCG-CGUu -3'
miRNA:   3'- cuuagGCAG------UGCGAGUGCGGCaGCGu -5'
25568 3' -55.9 NC_005337.1 + 100988 0.69 0.732691
Target:  5'- --cUUCGUCugGCUCGuCGCCacgcUCGCGg -3'
miRNA:   3'- cuuAGGCAGugCGAGU-GCGGc---AGCGU- -5'
25568 3' -55.9 NC_005337.1 + 2078 0.69 0.726751
Target:  5'- -uGUCCGcgagCGCGCUCgACGCCagcgccagcgccuccGUCGCGu -3'
miRNA:   3'- cuUAGGCa---GUGCGAG-UGCGG---------------CAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 95296 0.79 0.246413
Target:  5'- cGAGUCCGUaggCGCGCggCGCGCUGUUGCGc -3'
miRNA:   3'- -CUUAGGCA---GUGCGa-GUGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 5958 0.77 0.312237
Target:  5'- -----aGUCGCGCUCGCGCCGcgCGCGa -3'
miRNA:   3'- cuuaggCAGUGCGAGUGCGGCa-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 38890 0.74 0.471203
Target:  5'- gGAGUUCG-CGCGCgucgCGCgGCCGUCGCu -3'
miRNA:   3'- -CUUAGGCaGUGCGa---GUG-CGGCAGCGu -5'
25568 3' -55.9 NC_005337.1 + 61844 0.74 0.480683
Target:  5'- -cGUCgCGgagCACGCUCACGCCGU-GCu -3'
miRNA:   3'- cuUAG-GCa--GUGCGAGUGCGGCAgCGu -5'
25568 3' -55.9 NC_005337.1 + 94284 0.73 0.508678
Target:  5'- --cUCCGUggccuccUGCGUcaUCACGCCGUCGCGc -3'
miRNA:   3'- cuuAGGCA-------GUGCG--AGUGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 4741 0.72 0.549363
Target:  5'- aGAUCaCGg-ACGCUCGCGCCGcgCGCGa -3'
miRNA:   3'- cUUAG-GCagUGCGAGUGCGGCa-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 88032 0.72 0.57976
Target:  5'- -cAUCCagGUCACGCUCgccACGCUGaUCGCGu -3'
miRNA:   3'- cuUAGG--CAGUGCGAG---UGCGGC-AGCGU- -5'
25568 3' -55.9 NC_005337.1 + 118794 0.72 0.57976
Target:  5'- cGGcgCCGUCGugcCGCgCGCGCCGUCGg- -3'
miRNA:   3'- -CUuaGGCAGU---GCGaGUGCGGCAGCgu -5'
25568 3' -55.9 NC_005337.1 + 126202 0.72 0.589977
Target:  5'- ---gCCGUCGCGCgUCcuCGCgGUCGCGg -3'
miRNA:   3'- cuuaGGCAGUGCG-AGu-GCGgCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 48092 0.71 0.610498
Target:  5'- ---gUCGUCACGgaCGCGCCGgagCGCu -3'
miRNA:   3'- cuuaGGCAGUGCgaGUGCGGCa--GCGu -5'
25568 3' -55.9 NC_005337.1 + 95734 0.71 0.610498
Target:  5'- aGAUCCGgagCGCGUUCcCGCCGU-GCAc -3'
miRNA:   3'- cUUAGGCa--GUGCGAGuGCGGCAgCGU- -5'
25568 3' -55.9 NC_005337.1 + 16567 0.71 0.620786
Target:  5'- ---aCCGUCuucACGUUCACGCUGUggaCGCAg -3'
miRNA:   3'- cuuaGGCAG---UGCGAGUGCGGCA---GCGU- -5'
25568 3' -55.9 NC_005337.1 + 90406 0.71 0.651673
Target:  5'- -cAUCUc-CGCGUcCACGCCGUCGCAg -3'
miRNA:   3'- cuUAGGcaGUGCGaGUGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 78543 0.71 0.651673
Target:  5'- uGGAcCCGUaCACGggCGCGCCGUgCGCGu -3'
miRNA:   3'- -CUUaGGCA-GUGCgaGUGCGGCA-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 7843 0.7 0.672198
Target:  5'- ---gUgGUaCACGCgcacgCGCGCCGUCGCGc -3'
miRNA:   3'- cuuaGgCA-GUGCGa----GUGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 8317 0.7 0.71278
Target:  5'- --uUCCG-CGCGUUCACGCCcaCGCc -3'
miRNA:   3'- cuuAGGCaGUGCGAGUGCGGcaGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.