miRNA display CGI


Results 81 - 99 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 3' -55.9 NC_005337.1 + 61844 0.74 0.480683
Target:  5'- -cGUCgCGgagCACGCUCACGCCGU-GCu -3'
miRNA:   3'- cuUAG-GCa--GUGCGAGUGCGGCAgCGu -5'
25568 3' -55.9 NC_005337.1 + 38890 0.74 0.471203
Target:  5'- gGAGUUCG-CGCGCgucgCGCgGCCGUCGCu -3'
miRNA:   3'- -CUUAGGCaGUGCGa---GUG-CGGCAGCGu -5'
25568 3' -55.9 NC_005337.1 + 5958 0.77 0.312237
Target:  5'- -----aGUCGCGCUCGCGCCGcgCGCGa -3'
miRNA:   3'- cuuaggCAGUGCGAGUGCGGCa-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 95296 0.79 0.246413
Target:  5'- cGAGUCCGUaggCGCGCggCGCGCUGUUGCGc -3'
miRNA:   3'- -CUUAGGCA---GUGCGa-GUGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 16567 0.71 0.620786
Target:  5'- ---aCCGUCuucACGUUCACGCUGUggaCGCAg -3'
miRNA:   3'- cuuaGGCAG---UGCGAGUGCGGCA---GCGU- -5'
25568 3' -55.9 NC_005337.1 + 90406 0.71 0.651673
Target:  5'- -cAUCUc-CGCGUcCACGCCGUCGCAg -3'
miRNA:   3'- cuUAGGcaGUGCGaGUGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 78543 0.71 0.651673
Target:  5'- uGGAcCCGUaCACGggCGCGCCGUgCGCGu -3'
miRNA:   3'- -CUUaGGCA-GUGCgaGUGCGGCA-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 82172 0.68 0.816842
Target:  5'- ---cCCGUCGCGCaccugCACGCgGcCGCc -3'
miRNA:   3'- cuuaGGCAGUGCGa----GUGCGgCaGCGu -5'
25568 3' -55.9 NC_005337.1 + 63465 0.68 0.799105
Target:  5'- uGGAUgUCGUCgaugACGCUCACcaGCCGcCGCAu -3'
miRNA:   3'- -CUUA-GGCAG----UGCGAGUG--CGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 80357 0.68 0.790004
Target:  5'- uGAA-CCagcaCGCGUUCGCGCCgGUCGCGg -3'
miRNA:   3'- -CUUaGGca--GUGCGAGUGCGG-CAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 12354 0.69 0.771378
Target:  5'- -cGUCCGUC-CGCggacgUCGCgGCgCGUCGCGa -3'
miRNA:   3'- cuUAGGCAGuGCG-----AGUG-CG-GCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 105781 0.69 0.761871
Target:  5'- ---gCCG-CGCGCcgCGCGCCG-CGCGg -3'
miRNA:   3'- cuuaGGCaGUGCGa-GUGCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 103361 0.69 0.752248
Target:  5'- cGAGUCCaucggCGCaggGCUCGCcuGCCGUCGCu -3'
miRNA:   3'- -CUUAGGca---GUG---CGAGUG--CGGCAGCGu -5'
25568 3' -55.9 NC_005337.1 + 72363 0.69 0.732691
Target:  5'- --uUCCGcgcgaUCGCGCggACgGCCGUCGCGg -3'
miRNA:   3'- cuuAGGC-----AGUGCGagUG-CGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 100988 0.69 0.732691
Target:  5'- --cUUCGUCugGCUCGuCGCCacgcUCGCGg -3'
miRNA:   3'- cuuAGGCAGugCGAGU-GCGGc---AGCGU- -5'
25568 3' -55.9 NC_005337.1 + 2078 0.69 0.726751
Target:  5'- -uGUCCGcgagCGCGCUCgACGCCagcgccagcgccuccGUCGCGu -3'
miRNA:   3'- cuUAGGCa---GUGCGAG-UGCGG---------------CAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 8317 0.7 0.71278
Target:  5'- --uUCCG-CGCGUUCACGCCcaCGCc -3'
miRNA:   3'- cuuAGGCaGUGCGAGUGCGGcaGCGu -5'
25568 3' -55.9 NC_005337.1 + 7843 0.7 0.672198
Target:  5'- ---gUgGUaCACGCgcacgCGCGCCGUCGCGc -3'
miRNA:   3'- cuuaGgCA-GUGCGa----GUGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 99049 1.09 0.002709
Target:  5'- cGAAUCCGUCACGCUCACGCCGUCGCAg -3'
miRNA:   3'- -CUUAGGCAGUGCGAGUGCGGCAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.