miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 3' -55.9 NC_005337.1 + 100988 0.69 0.732691
Target:  5'- --cUUCGUCugGCUCGuCGCCacgcUCGCGg -3'
miRNA:   3'- cuuAGGCAGugCGAGU-GCGGc---AGCGU- -5'
25568 3' -55.9 NC_005337.1 + 6248 0.66 0.900694
Target:  5'- cGAGUCagCGUCgcugACGCUgGCGCCGgCGUc -3'
miRNA:   3'- -CUUAG--GCAG----UGCGAgUGCGGCaGCGu -5'
25568 3' -55.9 NC_005337.1 + 2078 0.69 0.726751
Target:  5'- -uGUCCGcgagCGCGCUCgACGCCagcgccagcgccuccGUCGCGu -3'
miRNA:   3'- cuUAGGCa---GUGCGAG-UGCGG---------------CAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 80357 0.68 0.790004
Target:  5'- uGAA-CCagcaCGCGUUCGCGCCgGUCGCGg -3'
miRNA:   3'- -CUUaGGca--GUGCGAGUGCGG-CAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 88504 0.67 0.842152
Target:  5'- ---gCCGUCAUGgaCAgCGCCG-CGCGg -3'
miRNA:   3'- cuuaGGCAGUGCgaGU-GCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 98716 0.66 0.906997
Target:  5'- -cAUCCGcUCGCGCg-GCGCCcugCGCGu -3'
miRNA:   3'- cuUAGGC-AGUGCGagUGCGGca-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 133648 0.66 0.900694
Target:  5'- gGAcgUCGcCGCGCUgGaCGCCGaCGCGg -3'
miRNA:   3'- -CUuaGGCaGUGCGAgU-GCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 131558 0.66 0.906997
Target:  5'- gGAcgUCGUCGCGCUCGUGCUccucCGCGu -3'
miRNA:   3'- -CUuaGGCAGUGCGAGUGCGGca--GCGU- -5'
25568 3' -55.9 NC_005337.1 + 127452 0.66 0.900694
Target:  5'- gGAAUCCaUCAUGCgCACGCuCGUgGaCAg -3'
miRNA:   3'- -CUUAGGcAGUGCGaGUGCG-GCAgC-GU- -5'
25568 3' -55.9 NC_005337.1 + 44982 0.66 0.894156
Target:  5'- --cUCCaaCACGCUCGcCGCCGUCc-- -3'
miRNA:   3'- cuuAGGcaGUGCGAGU-GCGGCAGcgu -5'
25568 3' -55.9 NC_005337.1 + 82565 0.66 0.887386
Target:  5'- cGAUCaucaGCGCgu-CGCCGUCGCAg -3'
miRNA:   3'- cUUAGgcagUGCGaguGCGGCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 16152 0.66 0.873166
Target:  5'- ----aCGUCgaaguaGCGCUCGCGCCG-CGUu -3'
miRNA:   3'- cuuagGCAG------UGCGAGUGCGGCaGCGu -5'
25568 3' -55.9 NC_005337.1 + 104559 0.67 0.850212
Target:  5'- ---aCCGcgCGCGCgugCGCGCC-UCGCGc -3'
miRNA:   3'- cuuaGGCa-GUGCGa--GUGCGGcAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 53599 0.66 0.906997
Target:  5'- -cAUgCG-CGCGCggaagCGCGCCG-CGCAg -3'
miRNA:   3'- cuUAgGCaGUGCGa----GUGCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 75177 0.67 0.850212
Target:  5'- ---cUCGUCGC-CUCGCGCgCGUcCGCGg -3'
miRNA:   3'- cuuaGGCAGUGcGAGUGCG-GCA-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 103810 0.67 0.850212
Target:  5'- ---aCCGUCGCGCUCAUGuCCuUCaaggGCAu -3'
miRNA:   3'- cuuaGGCAGUGCGAGUGC-GGcAG----CGU- -5'
25568 3' -55.9 NC_005337.1 + 118182 0.71 0.651673
Target:  5'- cGGAcCCGUUcgaGCUCGCGCCGgugggCGCGg -3'
miRNA:   3'- -CUUaGGCAGug-CGAGUGCGGCa----GCGU- -5'
25568 3' -55.9 NC_005337.1 + 58697 0.67 0.865725
Target:  5'- cGGUCaGUCGCG-UCAuCGCCGUCgGCAg -3'
miRNA:   3'- cUUAGgCAGUGCgAGU-GCGGCAG-CGU- -5'
25568 3' -55.9 NC_005337.1 + 100674 0.69 0.722775
Target:  5'- ----aCGcCGCGUUCGCGCCG-CGCGc -3'
miRNA:   3'- cuuagGCaGUGCGAGUGCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 28486 0.69 0.732691
Target:  5'- cGGAUgCGgcCGCGCggCGCGCgGUCGCGc -3'
miRNA:   3'- -CUUAgGCa-GUGCGa-GUGCGgCAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.