miRNA display CGI


Results 61 - 80 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 3' -55.9 NC_005337.1 + 28486 0.69 0.732691
Target:  5'- cGGAUgCGgcCGCGCggCGCGCgGUCGCGc -3'
miRNA:   3'- -CUUAgGCa-GUGCGa-GUGCGgCAGCGU- -5'
25568 3' -55.9 NC_005337.1 + 100674 0.69 0.722775
Target:  5'- ----aCGcCGCGUUCGCGCCG-CGCGc -3'
miRNA:   3'- cuuagGCaGUGCGAGUGCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 108839 0.69 0.722775
Target:  5'- ---gCCGaagCGCGCgggcgaCACGCCGUCGUg -3'
miRNA:   3'- cuuaGGCa--GUGCGa-----GUGCGGCAGCGu -5'
25568 3' -55.9 NC_005337.1 + 81730 0.7 0.71278
Target:  5'- ---gUCGuUCAgGCUCugGCUGUCGCc -3'
miRNA:   3'- cuuaGGC-AGUgCGAGugCGGCAGCGu -5'
25568 3' -55.9 NC_005337.1 + 58858 0.7 0.692591
Target:  5'- --cUUCG-CGCGCUCgcGCGCCGUcCGCGc -3'
miRNA:   3'- cuuAGGCaGUGCGAG--UGCGGCA-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 118182 0.71 0.651673
Target:  5'- cGGAcCCGUUcgaGCUCGCGCCGgugggCGCGg -3'
miRNA:   3'- -CUUaGGCAGug-CGAGUGCGGCa----GCGU- -5'
25568 3' -55.9 NC_005337.1 + 11447 0.72 0.57976
Target:  5'- --cUCCGUCACGaUCACGCgGaCGCGc -3'
miRNA:   3'- cuuAGGCAGUGCgAGUGCGgCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 24800 0.67 0.833898
Target:  5'- aGAUCCGgaagCGCGCcCACGCgCGcaCGCAc -3'
miRNA:   3'- cUUAGGCa---GUGCGaGUGCG-GCa-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 49612 0.67 0.842152
Target:  5'- -cGUCCGacgaccagaUCACGCggACGuuGUCGCu -3'
miRNA:   3'- cuUAGGC---------AGUGCGagUGCggCAGCGu -5'
25568 3' -55.9 NC_005337.1 + 28241 0.66 0.906997
Target:  5'- cGAAacgCCGUCGCGCggcaccaCGCGCaCGUgCGUg -3'
miRNA:   3'- -CUUa--GGCAGUGCGa------GUGCG-GCA-GCGu -5'
25568 3' -55.9 NC_005337.1 + 67971 0.66 0.906997
Target:  5'- ---aCCGcgGCGCUCACGCgGUC-CAg -3'
miRNA:   3'- cuuaGGCagUGCGAGUGCGgCAGcGU- -5'
25568 3' -55.9 NC_005337.1 + 133648 0.66 0.900694
Target:  5'- gGAcgUCGcCGCGCUgGaCGCCGaCGCGg -3'
miRNA:   3'- -CUuaGGCaGUGCGAgU-GCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 121492 0.66 0.900694
Target:  5'- -cAUCUG-CGgGUUCACGCCGcUGCAc -3'
miRNA:   3'- cuUAGGCaGUgCGAGUGCGGCaGCGU- -5'
25568 3' -55.9 NC_005337.1 + 40240 0.66 0.894156
Target:  5'- -cGUCgGcCGCGC-CGCGCCG-CGCc -3'
miRNA:   3'- cuUAGgCaGUGCGaGUGCGGCaGCGu -5'
25568 3' -55.9 NC_005337.1 + 101489 0.66 0.894156
Target:  5'- aGGcgCUGcUCGCGCUCAUGCgCGagCGCu -3'
miRNA:   3'- -CUuaGGC-AGUGCGAGUGCG-GCa-GCGu -5'
25568 3' -55.9 NC_005337.1 + 123838 0.67 0.858072
Target:  5'- --cUCCGUCccgGCGUUCGCGgCGU-GCAu -3'
miRNA:   3'- cuuAGGCAG---UGCGAGUGCgGCAgCGU- -5'
25568 3' -55.9 NC_005337.1 + 103810 0.67 0.850212
Target:  5'- ---aCCGUCGCGCUCAUGuCCuUCaaggGCAu -3'
miRNA:   3'- cuuaGGCAGUGCGAGUGC-GGcAG----CGU- -5'
25568 3' -55.9 NC_005337.1 + 75177 0.67 0.850212
Target:  5'- ---cUCGUCGC-CUCGCGCgCGUcCGCGg -3'
miRNA:   3'- cuuaGGCAGUGcGAGUGCG-GCA-GCGU- -5'
25568 3' -55.9 NC_005337.1 + 3016 0.67 0.850212
Target:  5'- --cUCCGgcaGCGCgugCGCGCCGaugugCGCGa -3'
miRNA:   3'- cuuAGGCag-UGCGa--GUGCGGCa----GCGU- -5'
25568 3' -55.9 NC_005337.1 + 27419 0.67 0.850212
Target:  5'- --cUCCGcaaagCACGCgccCGgGUCGUCGCAg -3'
miRNA:   3'- cuuAGGCa----GUGCGa--GUgCGGCAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.