miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 5' -51.2 NC_005337.1 + 35221 0.66 0.988913
Target:  5'- aCUGCgaCGGCGUgAGCGUGACGgaUUCg -3'
miRNA:   3'- cGACGagGUUGUAgUUGCACUGC--GAG- -5'
25568 5' -51.2 NC_005337.1 + 34625 0.66 0.988913
Target:  5'- cCUGCUCCu-CGUUgaaGACGgcgGGCGuCUCg -3'
miRNA:   3'- cGACGAGGuuGUAG---UUGCa--CUGC-GAG- -5'
25568 5' -51.2 NC_005337.1 + 89812 0.66 0.987383
Target:  5'- aGCUGCUUgagagcgaCGACAcgCAGCagGUGGCGCg- -3'
miRNA:   3'- -CGACGAG--------GUUGUa-GUUG--CACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 130542 0.66 0.987383
Target:  5'- cGCggGCgCCAACGUCAACGacggGAUcgGCUUc -3'
miRNA:   3'- -CGa-CGaGGUUGUAGUUGCa---CUG--CGAG- -5'
25568 5' -51.2 NC_005337.1 + 115233 0.66 0.986894
Target:  5'- --aGCUCCAACGUCugcuucGCGUuccgacuccugcgcGACGCg- -3'
miRNA:   3'- cgaCGAGGUUGUAGu-----UGCA--------------CUGCGag -5'
25568 5' -51.2 NC_005337.1 + 28586 0.66 0.985696
Target:  5'- cGCUGCgaCCAGCGcCAccGCGUcugGACGCa- -3'
miRNA:   3'- -CGACGa-GGUUGUaGU--UGCA---CUGCGag -5'
25568 5' -51.2 NC_005337.1 + 69894 0.66 0.985696
Target:  5'- cGCcGCUCCGACA---ACGUGcuccugcgcGCGCUg -3'
miRNA:   3'- -CGaCGAGGUUGUaguUGCAC---------UGCGAg -5'
25568 5' -51.2 NC_005337.1 + 68287 0.66 0.985696
Target:  5'- uCUGCggCCGGCcggCGGCGUGgACGCg- -3'
miRNA:   3'- cGACGa-GGUUGua-GUUGCAC-UGCGag -5'
25568 5' -51.2 NC_005337.1 + 110963 0.66 0.985696
Target:  5'- aGCUGCgcggCC-GCGUCGACGUcgugcguguuGACGUcCa -3'
miRNA:   3'- -CGACGa---GGuUGUAGUUGCA----------CUGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 88237 0.66 0.985696
Target:  5'- gGCUGCUgCGaagACGUCGuGCGUGccgGCGCg- -3'
miRNA:   3'- -CGACGAgGU---UGUAGU-UGCAC---UGCGag -5'
25568 5' -51.2 NC_005337.1 + 1959 0.66 0.983841
Target:  5'- cGCUGC-CC-GCGUCAGCGagcagccgGACgaGCUCc -3'
miRNA:   3'- -CGACGaGGuUGUAGUUGCa-------CUG--CGAG- -5'
25568 5' -51.2 NC_005337.1 + 73960 0.66 0.983841
Target:  5'- -gUGC-CCug---CAACGUGACGUUCa -3'
miRNA:   3'- cgACGaGGuuguaGUUGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 123588 0.66 0.983646
Target:  5'- cGCUGCUgCGagcugcgGCcgC-ACGUGccGCGCUCg -3'
miRNA:   3'- -CGACGAgGU-------UGuaGuUGCAC--UGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 94314 0.66 0.982644
Target:  5'- --gGCcgaCCAGCAggaUCGagcccacgaugaagcACGUGACGCUCa -3'
miRNA:   3'- cgaCGa--GGUUGU---AGU---------------UGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 48078 0.66 0.981809
Target:  5'- aGCUGUUCagguACGUCGucACG-GACGCg- -3'
miRNA:   3'- -CGACGAGgu--UGUAGU--UGCaCUGCGag -5'
25568 5' -51.2 NC_005337.1 + 24280 0.66 0.981809
Target:  5'- aGCUGg-CCGGCGcUCAcgcaggGCGUGGUGCUCg -3'
miRNA:   3'- -CGACgaGGUUGU-AGU------UGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 89150 0.66 0.981809
Target:  5'- aGCUGC-CCGACGUCuGgGUGcucCGCgUCg -3'
miRNA:   3'- -CGACGaGGUUGUAGuUgCACu--GCG-AG- -5'
25568 5' -51.2 NC_005337.1 + 80412 0.66 0.981809
Target:  5'- uCUGCUCgCGgugGCGUCGcugguCGUGcccGCGCUCg -3'
miRNA:   3'- cGACGAG-GU---UGUAGUu----GCAC---UGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 66286 0.66 0.981809
Target:  5'- -gUGgaCCAGacCAcCAACGUGACGUUCc -3'
miRNA:   3'- cgACgaGGUU--GUaGUUGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 133168 0.66 0.979591
Target:  5'- gGCUGCUcCCGGCggCGGCGcuGCGC-Cg -3'
miRNA:   3'- -CGACGA-GGUUGuaGUUGCacUGCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.