Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 35221 | 0.66 | 0.988913 |
Target: 5'- aCUGCgaCGGCGUgAGCGUGACGgaUUCg -3' miRNA: 3'- cGACGagGUUGUAgUUGCACUGC--GAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 39535 | 0.66 | 0.979591 |
Target: 5'- cGCggucgugGCUgCCGGCGcccCGGCG-GGCGCUCg -3' miRNA: 3'- -CGa------CGA-GGUUGUa--GUUGCaCUGCGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 34625 | 0.66 | 0.988913 |
Target: 5'- cCUGCUCCu-CGUUgaaGACGgcgGGCGuCUCg -3' miRNA: 3'- cGACGAGGuuGUAG---UUGCa--CUGC-GAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 115233 | 0.66 | 0.986894 |
Target: 5'- --aGCUCCAACGUCugcuucGCGUuccgacuccugcgcGACGCg- -3' miRNA: 3'- cgaCGAGGUUGUAGu-----UGCA--------------CUGCGag -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 69894 | 0.66 | 0.985696 |
Target: 5'- cGCcGCUCCGACA---ACGUGcuccugcgcGCGCUg -3' miRNA: 3'- -CGaCGAGGUUGUaguUGCAC---------UGCGAg -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 89812 | 0.66 | 0.987383 |
Target: 5'- aGCUGCUUgagagcgaCGACAcgCAGCagGUGGCGCg- -3' miRNA: 3'- -CGACGAG--------GUUGUa-GUUG--CACUGCGag -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 133168 | 0.66 | 0.979591 |
Target: 5'- gGCUGCUcCCGGCggCGGCGcuGCGC-Cg -3' miRNA: 3'- -CGACGA-GGUUGuaGUUGCacUGCGaG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 130339 | 0.66 | 0.979591 |
Target: 5'- cGCUGCUgCAGC-UCGACGc--CGCUa -3' miRNA: 3'- -CGACGAgGUUGuAGUUGCacuGCGAg -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 69166 | 0.66 | 0.979591 |
Target: 5'- uGCUGCUgCAgcACAUCGccaagcACGUGAgcgUGCUg -3' miRNA: 3'- -CGACGAgGU--UGUAGU------UGCACU---GCGAg -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 130542 | 0.66 | 0.987383 |
Target: 5'- cGCggGCgCCAACGUCAACGacggGAUcgGCUUc -3' miRNA: 3'- -CGa-CGaGGUUGUAGUUGCa---CUG--CGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 1959 | 0.66 | 0.983841 |
Target: 5'- cGCUGC-CC-GCGUCAGCGagcagccgGACgaGCUCc -3' miRNA: 3'- -CGACGaGGuUGUAGUUGCa-------CUG--CGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 74544 | 0.66 | 0.979591 |
Target: 5'- cGC-GCUCCGccGCG-CGgcGCGUGAUGCUg -3' miRNA: 3'- -CGaCGAGGU--UGUaGU--UGCACUGCGAg -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 133168 | 0.66 | 0.979591 |
Target: 5'- gGCUGCUcCCGGCggCGGCGcuGCGC-Cg -3' miRNA: 3'- -CGACGA-GGUUGuaGUUGCacUGCGaG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 94314 | 0.66 | 0.982644 |
Target: 5'- --gGCcgaCCAGCAggaUCGagcccacgaugaagcACGUGACGCUCa -3' miRNA: 3'- cgaCGa--GGUUGU---AGU---------------UGCACUGCGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 89150 | 0.66 | 0.981809 |
Target: 5'- aGCUGC-CCGACGUCuGgGUGcucCGCgUCg -3' miRNA: 3'- -CGACGaGGUUGUAGuUgCACu--GCG-AG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 68287 | 0.66 | 0.985696 |
Target: 5'- uCUGCggCCGGCcggCGGCGUGgACGCg- -3' miRNA: 3'- cGACGa-GGUUGua-GUUGCAC-UGCGag -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 66286 | 0.66 | 0.981809 |
Target: 5'- -gUGgaCCAGacCAcCAACGUGACGUUCc -3' miRNA: 3'- cgACgaGGUU--GUaGUUGCACUGCGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 54693 | 0.66 | 0.979591 |
Target: 5'- cGCUgaaGCUCggcgaCAACAagaUCGugGUGACGgUCa -3' miRNA: 3'- -CGA---CGAG-----GUUGU---AGUugCACUGCgAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 73960 | 0.66 | 0.983841 |
Target: 5'- -gUGC-CCug---CAACGUGACGUUCa -3' miRNA: 3'- cgACGaGGuuguaGUUGCACUGCGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 123588 | 0.66 | 0.983646 |
Target: 5'- cGCUGCUgCGagcugcgGCcgC-ACGUGccGCGCUCg -3' miRNA: 3'- -CGACGAgGU-------UGuaGuUGCAC--UGCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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