miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 5' -51.2 NC_005337.1 + 72418 0.67 0.974563
Target:  5'- cCUGCUCaacgAGCA-CGGCGUGAgcgUGCUCc -3'
miRNA:   3'- cGACGAGg---UUGUaGUUGCACU---GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 104955 0.67 0.977179
Target:  5'- uGCUGCUcaccgacuaCCGGCAcgugagCGGCGUGAugacccUGCUCu -3'
miRNA:   3'- -CGACGA---------GGUUGUa-----GUUGCACU------GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 8560 0.67 0.974563
Target:  5'- aGCgUGCgCaguACGUCGACGUcGACGUUCc -3'
miRNA:   3'- -CG-ACGaGgu-UGUAGUUGCA-CUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 24542 0.67 0.968688
Target:  5'- uGCUGCgcaccgCCGACugcUCGGCGUuccGGCGCcaUCg -3'
miRNA:   3'- -CGACGa-----GGUUGu--AGUUGCA---CUGCG--AG- -5'
25568 5' -51.2 NC_005337.1 + 46713 0.67 0.968688
Target:  5'- aGCgaggagGuCUCCGugaACGUCGAUGUGGCGgaCg -3'
miRNA:   3'- -CGa-----C-GAGGU---UGUAGUUGCACUGCgaG- -5'
25568 5' -51.2 NC_005337.1 + 55785 0.67 0.968688
Target:  5'- cCUGUUCCGGgAgcgCGACcUGACGCUg -3'
miRNA:   3'- cGACGAGGUUgUa--GUUGcACUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 2817 0.67 0.971735
Target:  5'- cGCUGCUgCAggACGUC-ACGguaGAUGCUg -3'
miRNA:   3'- -CGACGAgGU--UGUAGuUGCa--CUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 16638 0.67 0.974563
Target:  5'- aGC-GCUCCAcCA-CGGCGgUGACGCg- -3'
miRNA:   3'- -CGaCGAGGUuGUaGUUGC-ACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 74759 0.67 0.978168
Target:  5'- cGCUGUucUCCuuccugggcguauucGACAUCAACGUGGcCGacaUCu -3'
miRNA:   3'- -CGACG--AGG---------------UUGUAGUUGCACU-GCg--AG- -5'
25568 5' -51.2 NC_005337.1 + 69763 0.68 0.945433
Target:  5'- uGCaUGCUCUcgGGCuUCAcCGUGACGCg- -3'
miRNA:   3'- -CG-ACGAGG--UUGuAGUuGCACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 106094 0.68 0.961907
Target:  5'- gGCaUGCUCUAggGCAcCAGCG-GACGCa- -3'
miRNA:   3'- -CG-ACGAGGU--UGUaGUUGCaCUGCGag -5'
25568 5' -51.2 NC_005337.1 + 133659 0.68 0.95816
Target:  5'- cGCUGgacgCCGACGcggaguUCGccuGCGUGGCGUUCg -3'
miRNA:   3'- -CGACga--GGUUGU------AGU---UGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 10226 0.68 0.961907
Target:  5'- gGCaGCUCCAGCcgCGGCa-GGCGCg- -3'
miRNA:   3'- -CGaCGAGGUUGuaGUUGcaCUGCGag -5'
25568 5' -51.2 NC_005337.1 + 88309 0.68 0.949928
Target:  5'- --aGCUCgggGACGUCAGCGUGgACGC-Ca -3'
miRNA:   3'- cgaCGAGg--UUGUAGUUGCAC-UGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 43622 0.68 0.954169
Target:  5'- aGCcGCUCCGAgAUCAGCGccgccGCGCg- -3'
miRNA:   3'- -CGaCGAGGUUgUAGUUGCac---UGCGag -5'
25568 5' -51.2 NC_005337.1 + 105326 0.68 0.95816
Target:  5'- aGUUGC-CCAGCAcgugCGGCGgcggGAgGCUCc -3'
miRNA:   3'- -CGACGaGGUUGUa---GUUGCa---CUgCGAG- -5'
25568 5' -51.2 NC_005337.1 + 23920 0.68 0.95816
Target:  5'- gGCUGCcgcccUCCGACuUCGA---GACGCUCg -3'
miRNA:   3'- -CGACG-----AGGUUGuAGUUgcaCUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 73296 0.68 0.945433
Target:  5'- cGC-GCUCCccu-UCGACGUGAagaaGCUCu -3'
miRNA:   3'- -CGaCGAGGuuguAGUUGCACUg---CGAG- -5'
25568 5' -51.2 NC_005337.1 + 97088 0.68 0.945433
Target:  5'- uGCgUGC-CCAACcgCAugcuggugccGCaGUGGCGCUCg -3'
miRNA:   3'- -CG-ACGaGGUUGuaGU----------UG-CACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 133659 0.68 0.95816
Target:  5'- cGCUGgacgCCGACGcggaguUCGccuGCGUGGCGUUCg -3'
miRNA:   3'- -CGACga--GGUUGU------AGU---UGCACUGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.