miRNA display CGI


Results 61 - 80 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 5' -51.2 NC_005337.1 + 10072 0.69 0.940681
Target:  5'- cGCUGUcggaguccuccUCCGACGaCGugGUGGCGUa- -3'
miRNA:   3'- -CGACG-----------AGGUUGUaGUugCACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 43435 0.69 0.919067
Target:  5'- cGCUG-UCCAGCAUCAACcUGAU-CUCc -3'
miRNA:   3'- -CGACgAGGUUGUAGUUGcACUGcGAG- -5'
25568 5' -51.2 NC_005337.1 + 125236 0.69 0.930398
Target:  5'- aGCuUGUUUCGGCGccUCAGCuacgGACGCUCa -3'
miRNA:   3'- -CG-ACGAGGUUGU--AGUUGca--CUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 92842 0.69 0.940681
Target:  5'- aGCUGCU-CAACG-CGACGUucggcACGCUCc -3'
miRNA:   3'- -CGACGAgGUUGUaGUUGCAc----UGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 38854 0.69 0.940192
Target:  5'- cGCUGCcCC-------GCGUGACGCUCg -3'
miRNA:   3'- -CGACGaGGuuguaguUGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 31232 0.69 0.93567
Target:  5'- cGCUGCagCAGCAUCAGCagGUcGCgGCUCc -3'
miRNA:   3'- -CGACGagGUUGUAGUUG--CAcUG-CGAG- -5'
25568 5' -51.2 NC_005337.1 + 122564 0.69 0.930398
Target:  5'- uGCUGCUCCAGCcg-AGgGUGAaccggcUGCUCu -3'
miRNA:   3'- -CGACGAGGUUGuagUUgCACU------GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 79399 0.69 0.924863
Target:  5'- aGCUGCUCCAcgcggcggcgcgGCAUCucgaugAACGccgGGCGCg- -3'
miRNA:   3'- -CGACGAGGU------------UGUAG------UUGCa--CUGCGag -5'
25568 5' -51.2 NC_005337.1 + 130697 0.69 0.927108
Target:  5'- cGCUGCUCaagucccCGUCcGCGUGcguggagcucgucgaGCGCUCg -3'
miRNA:   3'- -CGACGAGguu----GUAGuUGCAC---------------UGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 42780 0.69 0.924863
Target:  5'- -gUGCUCgGGCggCAGCGUGACcUUCg -3'
miRNA:   3'- cgACGAGgUUGuaGUUGCACUGcGAG- -5'
25568 5' -51.2 NC_005337.1 + 95937 0.7 0.899445
Target:  5'- cGC-GCUCCAcguccagccagacGCGUCGGuCGUuGCGCUCg -3'
miRNA:   3'- -CGaCGAGGU-------------UGUAGUU-GCAcUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 78333 0.7 0.893287
Target:  5'- aGCUGCaggUCCAGCcggggcgcgGUCucgaaggugggcAGCGUGACGCUg -3'
miRNA:   3'- -CGACG---AGGUUG---------UAG------------UUGCACUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 64196 0.7 0.900117
Target:  5'- cGCUcgcGCUCCGACAgcUCGAaGUaGACGCUg -3'
miRNA:   3'- -CGA---CGAGGUUGU--AGUUgCA-CUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 43540 0.7 0.900117
Target:  5'- aGCUGCUCC-GCGUCGugGac-CGCUg -3'
miRNA:   3'- -CGACGAGGuUGUAGUugCacuGCGAg -5'
25568 5' -51.2 NC_005337.1 + 23461 0.7 0.900117
Target:  5'- uGCUGCUgCAACGUguccgacucCGACGUGGagaacgUGCUCc -3'
miRNA:   3'- -CGACGAgGUUGUA---------GUUGCACU------GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 39860 0.7 0.906692
Target:  5'- --gGCUUCGGCAUCAGCGUcuGcCGCUg -3'
miRNA:   3'- cgaCGAGGUUGUAGUUGCA--CuGCGAg -5'
25568 5' -51.2 NC_005337.1 + 42649 0.7 0.893287
Target:  5'- gGCUGCUCCGuGCGUgucUGUGGCGCg- -3'
miRNA:   3'- -CGACGAGGU-UGUAguuGCACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 14653 0.7 0.889069
Target:  5'- gGCgucCUCCGGCAUCAGCGcggcgagacaggaguUGcaGCGCUCg -3'
miRNA:   3'- -CGac-GAGGUUGUAGUUGC---------------AC--UGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 119369 0.71 0.878881
Target:  5'- aGCUGCuUCCAcCAUCGGCGccGCGC-Ca -3'
miRNA:   3'- -CGACG-AGGUuGUAGUUGCacUGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 72025 0.71 0.86351
Target:  5'- --gGUUCCgAACGUCAACGUGAUGaacaUCu -3'
miRNA:   3'- cgaCGAGG-UUGUAGUUGCACUGCg---AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.