miRNA display CGI


Results 81 - 100 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 5' -51.2 NC_005337.1 + 119369 0.71 0.878881
Target:  5'- aGCUGCuUCCAcCAUCGGCGccGCGC-Ca -3'
miRNA:   3'- -CGACG-AGGUuGUAGUUGCacUGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 110005 0.71 0.871313
Target:  5'- aGCUGCUCCAGacUCAGCGUcgggagcauGAUGUUg -3'
miRNA:   3'- -CGACGAGGUUguAGUUGCA---------CUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 132278 0.71 0.86351
Target:  5'- uGCUGCUgCGGuCGUcCGACGcGACGCUg -3'
miRNA:   3'- -CGACGAgGUU-GUA-GUUGCaCUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 107954 0.72 0.83876
Target:  5'- uGCUGCUggacaaCCGGacCGUCAugGUG-CGCUCc -3'
miRNA:   3'- -CGACGA------GGUU--GUAGUugCACuGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 96829 0.72 0.802921
Target:  5'- cCUGCgggugCgCAGCcgCGGCGUGGCGUUCc -3'
miRNA:   3'- cGACGa----G-GUUGuaGUUGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 42416 0.72 0.802921
Target:  5'- cGCUGUgcgCCGGCuUCGGCGUGA-GCUUc -3'
miRNA:   3'- -CGACGa--GGUUGuAGUUGCACUgCGAG- -5'
25568 5' -51.2 NC_005337.1 + 33399 0.72 0.821217
Target:  5'- gGCUGCUCCAugcgcguCAUCGGCacgGUGAgCGCg- -3'
miRNA:   3'- -CGACGAGGUu------GUAGUUG---CACU-GCGag -5'
25568 5' -51.2 NC_005337.1 + 99706 0.72 0.83876
Target:  5'- cGCUGCgcgcggCCAuCGUC-GCGgacagGACGCUCu -3'
miRNA:   3'- -CGACGa-----GGUuGUAGuUGCa----CUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 9476 0.72 0.812159
Target:  5'- cGCUGCggccccacUCCAGCG-CGGCGaUGACGCg- -3'
miRNA:   3'- -CGACG--------AGGUUGUaGUUGC-ACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 46850 0.72 0.830087
Target:  5'- cGCUGa-CCGugAaCGACGUGGCGCUg -3'
miRNA:   3'- -CGACgaGGUugUaGUUGCACUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 14368 0.72 0.829209
Target:  5'- uGCUGCUCUaugucguGACA-CAGCGUGccuauguCGCUCu -3'
miRNA:   3'- -CGACGAGG-------UUGUaGUUGCACu------GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 117788 0.72 0.815804
Target:  5'- gGCU-CUCCAGCAUguuagugggcaugaaCGGCGUGGCGCcCg -3'
miRNA:   3'- -CGAcGAGGUUGUA---------------GUUGCACUGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 120385 0.73 0.783947
Target:  5'- cGCUGgUCCc-CGUCAACGUGuacACGCUg -3'
miRNA:   3'- -CGACgAGGuuGUAGUUGCAC---UGCGAg -5'
25568 5' -51.2 NC_005337.1 + 82914 0.73 0.782982
Target:  5'- aGCUGCUCCAGCuccuUCAucugcuuguucacGCGgggGugGUUCc -3'
miRNA:   3'- -CGACGAGGUUGu---AGU-------------UGCa--CugCGAG- -5'
25568 5' -51.2 NC_005337.1 + 55199 0.73 0.774231
Target:  5'- uGCUGCg-CAGCuUCGugGUGGCGCg- -3'
miRNA:   3'- -CGACGagGUUGuAGUugCACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 128007 0.73 0.751373
Target:  5'- gGCUGCUCCuggacgccggcgccAGCGUCAGC--GACGCUg -3'
miRNA:   3'- -CGACGAGG--------------UUGUAGUUGcaCUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 75738 0.74 0.745304
Target:  5'- cGCUGCgggacgacaacgucaCCAGCAUCGaggGCGUGAuuccgcCGCUCg -3'
miRNA:   3'- -CGACGa--------------GGUUGUAGU---UGCACU------GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 44634 0.74 0.702909
Target:  5'- cGCUGCUCCugaucgugcGCcgCAGCG-GGCGCUa -3'
miRNA:   3'- -CGACGAGGu--------UGuaGUUGCaCUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 100330 0.74 0.692375
Target:  5'- --cGCUCU-ACAUCGACGUGGCGgaCg -3'
miRNA:   3'- cgaCGAGGuUGUAGUUGCACUGCgaG- -5'
25568 5' -51.2 NC_005337.1 + 110825 0.74 0.692375
Target:  5'- cGUUGCagCAGCAgagguGCGUGAUGCUCg -3'
miRNA:   3'- -CGACGagGUUGUagu--UGCACUGCGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.