miRNA display CGI


Results 61 - 80 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 5' -51.2 NC_005337.1 + 24542 0.67 0.968688
Target:  5'- uGCUGCgcaccgCCGACugcUCGGCGUuccGGCGCcaUCg -3'
miRNA:   3'- -CGACGa-----GGUUGu--AGUUGCA---CUGCG--AG- -5'
25568 5' -51.2 NC_005337.1 + 115378 0.67 0.968688
Target:  5'- cGCgacGCUCCAgcGCGUguACGacACGCUCc -3'
miRNA:   3'- -CGa--CGAGGU--UGUAguUGCacUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 115973 0.67 0.970844
Target:  5'- cGCUGUUCCGcugccuguucgugcACAUCGcgcuggGCGUG-CgGCUCa -3'
miRNA:   3'- -CGACGAGGU--------------UGUAGU------UGCACuG-CGAG- -5'
25568 5' -51.2 NC_005337.1 + 2817 0.67 0.971735
Target:  5'- cGCUGCUgCAggACGUC-ACGguaGAUGCUg -3'
miRNA:   3'- -CGACGAgGU--UGUAGuUGCa--CUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 122799 0.67 0.971735
Target:  5'- uGCUGCgcgcggCCAucgACcgCAGCGUG-CGCg- -3'
miRNA:   3'- -CGACGa-----GGU---UGuaGUUGCACuGCGag -5'
25568 5' -51.2 NC_005337.1 + 43675 0.67 0.972892
Target:  5'- aGCUGCUCUucGGCgccaugggguuccggGUCcACGUGA-GCUCg -3'
miRNA:   3'- -CGACGAGG--UUG---------------UAGuUGCACUgCGAG- -5'
25568 5' -51.2 NC_005337.1 + 125523 0.67 0.973737
Target:  5'- gGCUGCUcgugcgguacggcgCCGACAUCcgcgccaaggacGACGUGGgGCg- -3'
miRNA:   3'- -CGACGA--------------GGUUGUAG------------UUGCACUgCGag -5'
25568 5' -51.2 NC_005337.1 + 16638 0.67 0.974563
Target:  5'- aGC-GCUCCAcCA-CGGCGgUGACGCg- -3'
miRNA:   3'- -CGaCGAGGUuGUaGUUGC-ACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 131596 0.67 0.974563
Target:  5'- cGCaGCUCCgGACGUCcuGCGggcugGACGaCUCu -3'
miRNA:   3'- -CGaCGAGG-UUGUAGu-UGCa----CUGC-GAG- -5'
25568 5' -51.2 NC_005337.1 + 8560 0.67 0.974563
Target:  5'- aGCgUGCgCaguACGUCGACGUcGACGUUCc -3'
miRNA:   3'- -CG-ACGaGgu-UGUAGUUGCA-CUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 72418 0.67 0.974563
Target:  5'- cCUGCUCaacgAGCA-CGGCGUGAgcgUGCUCc -3'
miRNA:   3'- cGACGAGg---UUGUaGUUGCACU---GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 90618 0.67 0.974563
Target:  5'- aGCaGCUUCAcgaaGUCGGCGUGGCuCUCc -3'
miRNA:   3'- -CGaCGAGGUug--UAGUUGCACUGcGAG- -5'
25568 5' -51.2 NC_005337.1 + 104955 0.67 0.977179
Target:  5'- uGCUGCUcaccgacuaCCGGCAcgugagCGGCGUGAugacccUGCUCu -3'
miRNA:   3'- -CGACGA---------GGUUGUa-----GUUGCACU------GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 56090 0.67 0.977179
Target:  5'- cCUGgccaUCUAcgGCuUCGGCGUGACGUUCa -3'
miRNA:   3'- cGACg---AGGU--UGuAGUUGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 32377 0.67 0.978168
Target:  5'- cGgUGCUUCAGCAUgGaguggugcaggaacuGCGUGAaguccaCGCUCg -3'
miRNA:   3'- -CgACGAGGUUGUAgU---------------UGCACU------GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 74759 0.67 0.978168
Target:  5'- cGCUGUucUCCuuccugggcguauucGACAUCAACGUGGcCGacaUCu -3'
miRNA:   3'- -CGACG--AGG---------------UUGUAGUUGCACU-GCg--AG- -5'
25568 5' -51.2 NC_005337.1 + 93809 0.67 0.978168
Target:  5'- cGCgGCUCCAGuuucgucugcggcguCGUCAAgggcCGUG-CGCUCc -3'
miRNA:   3'- -CGaCGAGGUU---------------GUAGUU----GCACuGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 104116 0.66 0.979591
Target:  5'- cGCUaCUCCGACAUCuaccccgcgcGCGUGgaGCGCg- -3'
miRNA:   3'- -CGAcGAGGUUGUAGu---------UGCAC--UGCGag -5'
25568 5' -51.2 NC_005337.1 + 133168 0.66 0.979591
Target:  5'- gGCUGCUcCCGGCggCGGCGcuGCGC-Cg -3'
miRNA:   3'- -CGACGA-GGUUGuaGUUGCacUGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 74544 0.66 0.979591
Target:  5'- cGC-GCUCCGccGCG-CGgcGCGUGAUGCUg -3'
miRNA:   3'- -CGaCGAGGU--UGUaGU--UGCACUGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.