Results 101 - 105 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 115233 | 0.66 | 0.986894 |
Target: 5'- --aGCUCCAACGUCugcuucGCGUuccgacuccugcgcGACGCg- -3' miRNA: 3'- cgaCGAGGUUGUAGu-----UGCA--------------CUGCGag -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 89812 | 0.66 | 0.987383 |
Target: 5'- aGCUGCUUgagagcgaCGACAcgCAGCagGUGGCGCg- -3' miRNA: 3'- -CGACGAG--------GUUGUa-GUUG--CACUGCGag -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 130542 | 0.66 | 0.987383 |
Target: 5'- cGCggGCgCCAACGUCAACGacggGAUcgGCUUc -3' miRNA: 3'- -CGa-CGaGGUUGUAGUUGCa---CUG--CGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 34625 | 0.66 | 0.988913 |
Target: 5'- cCUGCUCCu-CGUUgaaGACGgcgGGCGuCUCg -3' miRNA: 3'- cGACGAGGuuGUAG---UUGCa--CUGC-GAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 35221 | 0.66 | 0.988913 |
Target: 5'- aCUGCgaCGGCGUgAGCGUGACGgaUUCg -3' miRNA: 3'- cGACGagGUUGUAgUUGCACUGC--GAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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