Results 41 - 60 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 2817 | 0.67 | 0.971735 |
Target: 5'- cGCUGCUgCAggACGUC-ACGguaGAUGCUg -3' miRNA: 3'- -CGACGAgGU--UGUAGuUGCa--CUGCGAg -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 122799 | 0.67 | 0.971735 |
Target: 5'- uGCUGCgcgcggCCAucgACcgCAGCGUG-CGCg- -3' miRNA: 3'- -CGACGa-----GGU---UGuaGUUGCACuGCGag -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 115973 | 0.67 | 0.970844 |
Target: 5'- cGCUGUUCCGcugccuguucgugcACAUCGcgcuggGCGUG-CgGCUCa -3' miRNA: 3'- -CGACGAGGU--------------UGUAGU------UGCACuG-CGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 39074 | 0.67 | 0.968688 |
Target: 5'- gGCUGUUCuuCAGCcagGACGUGcaGCGCUCg -3' miRNA: 3'- -CGACGAG--GUUGuagUUGCAC--UGCGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 75537 | 0.67 | 0.968688 |
Target: 5'- uGCUGCUCCGguGCAcCcGCGccGGCGCg- -3' miRNA: 3'- -CGACGAGGU--UGUaGuUGCa-CUGCGag -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 115378 | 0.67 | 0.968688 |
Target: 5'- cGCgacGCUCCAgcGCGUguACGacACGCUCc -3' miRNA: 3'- -CGa--CGAGGU--UGUAguUGCacUGCGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 24542 | 0.67 | 0.968688 |
Target: 5'- uGCUGCgcaccgCCGACugcUCGGCGUuccGGCGCcaUCg -3' miRNA: 3'- -CGACGa-----GGUUGu--AGUUGCA---CUGCG--AG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 46713 | 0.67 | 0.968688 |
Target: 5'- aGCgaggagGuCUCCGugaACGUCGAUGUGGCGgaCg -3' miRNA: 3'- -CGa-----C-GAGGU---UGUAGUUGCACUGCgaG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 55785 | 0.67 | 0.968688 |
Target: 5'- cCUGUUCCGGgAgcgCGACcUGACGCUg -3' miRNA: 3'- cGACGAGGUUgUa--GUUGcACUGCGAg -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 10226 | 0.68 | 0.961907 |
Target: 5'- gGCaGCUCCAGCcgCGGCa-GGCGCg- -3' miRNA: 3'- -CGaCGAGGUUGuaGUUGcaCUGCGag -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 106094 | 0.68 | 0.961907 |
Target: 5'- gGCaUGCUCUAggGCAcCAGCG-GACGCa- -3' miRNA: 3'- -CG-ACGAGGU--UGUaGUUGCaCUGCGag -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 23920 | 0.68 | 0.95816 |
Target: 5'- gGCUGCcgcccUCCGACuUCGA---GACGCUCg -3' miRNA: 3'- -CGACG-----AGGUUGuAGUUgcaCUGCGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 133659 | 0.68 | 0.95816 |
Target: 5'- cGCUGgacgCCGACGcggaguUCGccuGCGUGGCGUUCg -3' miRNA: 3'- -CGACga--GGUUGU------AGU---UGCACUGCGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 133659 | 0.68 | 0.95816 |
Target: 5'- cGCUGgacgCCGACGcggaguUCGccuGCGUGGCGUUCg -3' miRNA: 3'- -CGACga--GGUUGU------AGU---UGCACUGCGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 105326 | 0.68 | 0.95816 |
Target: 5'- aGUUGC-CCAGCAcgugCGGCGgcggGAgGCUCc -3' miRNA: 3'- -CGACGaGGUUGUa---GUUGCa---CUgCGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 43622 | 0.68 | 0.954169 |
Target: 5'- aGCcGCUCCGAgAUCAGCGccgccGCGCg- -3' miRNA: 3'- -CGaCGAGGUUgUAGUUGCac---UGCGag -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 88309 | 0.68 | 0.949928 |
Target: 5'- --aGCUCgggGACGUCAGCGUGgACGC-Ca -3' miRNA: 3'- cgaCGAGg--UUGUAGUUGCAC-UGCGaG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 97088 | 0.68 | 0.945433 |
Target: 5'- uGCgUGC-CCAACcgCAugcuggugccGCaGUGGCGCUCg -3' miRNA: 3'- -CG-ACGaGGUUGuaGU----------UG-CACUGCGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 73296 | 0.68 | 0.945433 |
Target: 5'- cGC-GCUCCccu-UCGACGUGAagaaGCUCu -3' miRNA: 3'- -CGaCGAGGuuguAGUUGCACUg---CGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 69763 | 0.68 | 0.945433 |
Target: 5'- uGCaUGCUCUcgGGCuUCAcCGUGACGCg- -3' miRNA: 3'- -CG-ACGAGG--UUGuAGUuGCACUGCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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