miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 5' -51.2 NC_005337.1 + 1959 0.66 0.983841
Target:  5'- cGCUGC-CC-GCGUCAGCGagcagccgGACgaGCUCc -3'
miRNA:   3'- -CGACGaGGuUGUAGUUGCa-------CUG--CGAG- -5'
25568 5' -51.2 NC_005337.1 + 2817 0.67 0.971735
Target:  5'- cGCUGCUgCAggACGUC-ACGguaGAUGCUg -3'
miRNA:   3'- -CGACGAgGU--UGUAGuUGCa--CUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 8560 0.67 0.974563
Target:  5'- aGCgUGCgCaguACGUCGACGUcGACGUUCc -3'
miRNA:   3'- -CG-ACGaGgu-UGUAGUUGCA-CUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 9476 0.72 0.812159
Target:  5'- cGCUGCggccccacUCCAGCG-CGGCGaUGACGCg- -3'
miRNA:   3'- -CGACG--------AGGUUGUaGUUGC-ACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 10072 0.69 0.940681
Target:  5'- cGCUGUcggaguccuccUCCGACGaCGugGUGGCGUa- -3'
miRNA:   3'- -CGACG-----------AGGUUGUaGUugCACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 10226 0.68 0.961907
Target:  5'- gGCaGCUCCAGCcgCGGCa-GGCGCg- -3'
miRNA:   3'- -CGaCGAGGUUGuaGUUGcaCUGCGag -5'
25568 5' -51.2 NC_005337.1 + 14368 0.72 0.829209
Target:  5'- uGCUGCUCUaugucguGACA-CAGCGUGccuauguCGCUCu -3'
miRNA:   3'- -CGACGAGG-------UUGUaGUUGCACu------GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 14653 0.7 0.889069
Target:  5'- gGCgucCUCCGGCAUCAGCGcggcgagacaggaguUGcaGCGCUCg -3'
miRNA:   3'- -CGac-GAGGUUGUAGUUGC---------------AC--UGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 15193 0.74 0.702909
Target:  5'- -gUGUUCCAGCAU-AGCGUccaGGCGCUCg -3'
miRNA:   3'- cgACGAGGUUGUAgUUGCA---CUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 16638 0.67 0.974563
Target:  5'- aGC-GCUCCAcCA-CGGCGgUGACGCg- -3'
miRNA:   3'- -CGaCGAGGUuGUaGUUGC-ACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 23461 0.7 0.900117
Target:  5'- uGCUGCUgCAACGUguccgacucCGACGUGGagaacgUGCUCc -3'
miRNA:   3'- -CGACGAgGUUGUA---------GUUGCACU------GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 23920 0.68 0.95816
Target:  5'- gGCUGCcgcccUCCGACuUCGA---GACGCUCg -3'
miRNA:   3'- -CGACG-----AGGUUGuAGUUgcaCUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 24280 0.66 0.981809
Target:  5'- aGCUGg-CCGGCGcUCAcgcaggGCGUGGUGCUCg -3'
miRNA:   3'- -CGACgaGGUUGU-AGU------UGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 24542 0.67 0.968688
Target:  5'- uGCUGCgcaccgCCGACugcUCGGCGUuccGGCGCcaUCg -3'
miRNA:   3'- -CGACGa-----GGUUGu--AGUUGCA---CUGCG--AG- -5'
25568 5' -51.2 NC_005337.1 + 28586 0.66 0.985696
Target:  5'- cGCUGCgaCCAGCGcCAccGCGUcugGACGCa- -3'
miRNA:   3'- -CGACGa-GGUUGUaGU--UGCA---CUGCGag -5'
25568 5' -51.2 NC_005337.1 + 31232 0.69 0.93567
Target:  5'- cGCUGCagCAGCAUCAGCagGUcGCgGCUCc -3'
miRNA:   3'- -CGACGagGUUGUAGUUG--CAcUG-CGAG- -5'
25568 5' -51.2 NC_005337.1 + 32377 0.67 0.978168
Target:  5'- cGgUGCUUCAGCAUgGaguggugcaggaacuGCGUGAaguccaCGCUCg -3'
miRNA:   3'- -CgACGAGGUUGUAgU---------------UGCACU------GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 33399 0.72 0.821217
Target:  5'- gGCUGCUCCAugcgcguCAUCGGCacgGUGAgCGCg- -3'
miRNA:   3'- -CGACGAGGUu------GUAGUUG---CACU-GCGag -5'
25568 5' -51.2 NC_005337.1 + 34625 0.66 0.988913
Target:  5'- cCUGCUCCu-CGUUgaaGACGgcgGGCGuCUCg -3'
miRNA:   3'- cGACGAGGuuGUAG---UUGCa--CUGC-GAG- -5'
25568 5' -51.2 NC_005337.1 + 35221 0.66 0.988913
Target:  5'- aCUGCgaCGGCGUgAGCGUGACGgaUUCg -3'
miRNA:   3'- cGACGagGUUGUAgUUGCACUGC--GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.