miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 5' -51.2 NC_005337.1 + 38854 0.69 0.940192
Target:  5'- cGCUGCcCC-------GCGUGACGCUCg -3'
miRNA:   3'- -CGACGaGGuuguaguUGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 39074 0.67 0.968688
Target:  5'- gGCUGUUCuuCAGCcagGACGUGcaGCGCUCg -3'
miRNA:   3'- -CGACGAG--GUUGuagUUGCAC--UGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 39535 0.66 0.979591
Target:  5'- cGCggucgugGCUgCCGGCGcccCGGCG-GGCGCUCg -3'
miRNA:   3'- -CGa------CGA-GGUUGUa--GUUGCaCUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 39860 0.7 0.906692
Target:  5'- --gGCUUCGGCAUCAGCGUcuGcCGCUg -3'
miRNA:   3'- cgaCGAGGUUGUAGUUGCA--CuGCGAg -5'
25568 5' -51.2 NC_005337.1 + 42416 0.72 0.802921
Target:  5'- cGCUGUgcgCCGGCuUCGGCGUGA-GCUUc -3'
miRNA:   3'- -CGACGa--GGUUGuAGUUGCACUgCGAG- -5'
25568 5' -51.2 NC_005337.1 + 42649 0.7 0.893287
Target:  5'- gGCUGCUCCGuGCGUgucUGUGGCGCg- -3'
miRNA:   3'- -CGACGAGGU-UGUAguuGCACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 42780 0.69 0.924863
Target:  5'- -gUGCUCgGGCggCAGCGUGACcUUCg -3'
miRNA:   3'- cgACGAGgUUGuaGUUGCACUGcGAG- -5'
25568 5' -51.2 NC_005337.1 + 43435 0.69 0.919067
Target:  5'- cGCUG-UCCAGCAUCAACcUGAU-CUCc -3'
miRNA:   3'- -CGACgAGGUUGUAGUUGcACUGcGAG- -5'
25568 5' -51.2 NC_005337.1 + 43540 0.7 0.900117
Target:  5'- aGCUGCUCC-GCGUCGugGac-CGCUg -3'
miRNA:   3'- -CGACGAGGuUGUAGUugCacuGCGAg -5'
25568 5' -51.2 NC_005337.1 + 43622 0.68 0.954169
Target:  5'- aGCcGCUCCGAgAUCAGCGccgccGCGCg- -3'
miRNA:   3'- -CGaCGAGGUUgUAGUUGCac---UGCGag -5'
25568 5' -51.2 NC_005337.1 + 43675 0.67 0.972892
Target:  5'- aGCUGCUCUucGGCgccaugggguuccggGUCcACGUGA-GCUCg -3'
miRNA:   3'- -CGACGAGG--UUG---------------UAGuUGCACUgCGAG- -5'
25568 5' -51.2 NC_005337.1 + 44634 0.74 0.702909
Target:  5'- cGCUGCUCCugaucgugcGCcgCAGCG-GGCGCUa -3'
miRNA:   3'- -CGACGAGGu--------UGuaGUUGCaCUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 46713 0.67 0.968688
Target:  5'- aGCgaggagGuCUCCGugaACGUCGAUGUGGCGgaCg -3'
miRNA:   3'- -CGa-----C-GAGGU---UGUAGUUGCACUGCgaG- -5'
25568 5' -51.2 NC_005337.1 + 46850 0.72 0.830087
Target:  5'- cGCUGa-CCGugAaCGACGUGGCGCUg -3'
miRNA:   3'- -CGACgaGGUugUaGUUGCACUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 48078 0.66 0.981809
Target:  5'- aGCUGUUCagguACGUCGucACG-GACGCg- -3'
miRNA:   3'- -CGACGAGgu--UGUAGU--UGCaCUGCGag -5'
25568 5' -51.2 NC_005337.1 + 48258 0.76 0.606949
Target:  5'- aGgUGCUCCA---UCGGCGUGACGCa- -3'
miRNA:   3'- -CgACGAGGUuguAGUUGCACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 54693 0.66 0.979591
Target:  5'- cGCUgaaGCUCggcgaCAACAagaUCGugGUGACGgUCa -3'
miRNA:   3'- -CGA---CGAG-----GUUGU---AGUugCACUGCgAG- -5'
25568 5' -51.2 NC_005337.1 + 55199 0.73 0.774231
Target:  5'- uGCUGCg-CAGCuUCGugGUGGCGCg- -3'
miRNA:   3'- -CGACGagGUUGuAGUugCACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 55785 0.67 0.968688
Target:  5'- cCUGUUCCGGgAgcgCGACcUGACGCUg -3'
miRNA:   3'- cGACGAGGUUgUa--GUUGcACUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 56090 0.67 0.977179
Target:  5'- cCUGgccaUCUAcgGCuUCGGCGUGACGUUCa -3'
miRNA:   3'- cGACg---AGGU--UGuAGUUGCACUGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.