miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 5' -51.2 NC_005337.1 + 64196 0.7 0.900117
Target:  5'- cGCUcgcGCUCCGACAgcUCGAaGUaGACGCUg -3'
miRNA:   3'- -CGA---CGAGGUUGU--AGUUgCA-CUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 66286 0.66 0.981809
Target:  5'- -gUGgaCCAGacCAcCAACGUGACGUUCc -3'
miRNA:   3'- cgACgaGGUU--GUaGUUGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 68287 0.66 0.985696
Target:  5'- uCUGCggCCGGCcggCGGCGUGgACGCg- -3'
miRNA:   3'- cGACGa-GGUUGua-GUUGCAC-UGCGag -5'
25568 5' -51.2 NC_005337.1 + 69166 0.66 0.979591
Target:  5'- uGCUGCUgCAgcACAUCGccaagcACGUGAgcgUGCUg -3'
miRNA:   3'- -CGACGAgGU--UGUAGU------UGCACU---GCGAg -5'
25568 5' -51.2 NC_005337.1 + 69763 0.68 0.945433
Target:  5'- uGCaUGCUCUcgGGCuUCAcCGUGACGCg- -3'
miRNA:   3'- -CG-ACGAGG--UUGuAGUuGCACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 69894 0.66 0.985696
Target:  5'- cGCcGCUCCGACA---ACGUGcuccugcgcGCGCUg -3'
miRNA:   3'- -CGaCGAGGUUGUaguUGCAC---------UGCGAg -5'
25568 5' -51.2 NC_005337.1 + 72025 0.71 0.86351
Target:  5'- --gGUUCCgAACGUCAACGUGAUGaacaUCu -3'
miRNA:   3'- cgaCGAGG-UUGUAGUUGCACUGCg---AG- -5'
25568 5' -51.2 NC_005337.1 + 72418 0.67 0.974563
Target:  5'- cCUGCUCaacgAGCA-CGGCGUGAgcgUGCUCc -3'
miRNA:   3'- cGACGAGg---UUGUaGUUGCACU---GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 73296 0.68 0.945433
Target:  5'- cGC-GCUCCccu-UCGACGUGAagaaGCUCu -3'
miRNA:   3'- -CGaCGAGGuuguAGUUGCACUg---CGAG- -5'
25568 5' -51.2 NC_005337.1 + 73960 0.66 0.983841
Target:  5'- -gUGC-CCug---CAACGUGACGUUCa -3'
miRNA:   3'- cgACGaGGuuguaGUUGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 74544 0.66 0.979591
Target:  5'- cGC-GCUCCGccGCG-CGgcGCGUGAUGCUg -3'
miRNA:   3'- -CGaCGAGGU--UGUaGU--UGCACUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 74759 0.67 0.978168
Target:  5'- cGCUGUucUCCuuccugggcguauucGACAUCAACGUGGcCGacaUCu -3'
miRNA:   3'- -CGACG--AGG---------------UUGUAGUUGCACU-GCg--AG- -5'
25568 5' -51.2 NC_005337.1 + 75537 0.67 0.968688
Target:  5'- uGCUGCUCCGguGCAcCcGCGccGGCGCg- -3'
miRNA:   3'- -CGACGAGGU--UGUaGuUGCa-CUGCGag -5'
25568 5' -51.2 NC_005337.1 + 75738 0.74 0.745304
Target:  5'- cGCUGCgggacgacaacgucaCCAGCAUCGaggGCGUGAuuccgcCGCUCg -3'
miRNA:   3'- -CGACGa--------------GGUUGUAGU---UGCACU------GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 78333 0.7 0.893287
Target:  5'- aGCUGCaggUCCAGCcggggcgcgGUCucgaaggugggcAGCGUGACGCUg -3'
miRNA:   3'- -CGACG---AGGUUG---------UAG------------UUGCACUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 79237 0.66 0.979591
Target:  5'- -aUGC-CCAGCAgguACGUGA-GCUCg -3'
miRNA:   3'- cgACGaGGUUGUaguUGCACUgCGAG- -5'
25568 5' -51.2 NC_005337.1 + 79399 0.69 0.924863
Target:  5'- aGCUGCUCCAcgcggcggcgcgGCAUCucgaugAACGccgGGCGCg- -3'
miRNA:   3'- -CGACGAGGU------------UGUAG------UUGCa--CUGCGag -5'
25568 5' -51.2 NC_005337.1 + 80412 0.66 0.981809
Target:  5'- uCUGCUCgCGgugGCGUCGcugguCGUGcccGCGCUCg -3'
miRNA:   3'- cGACGAG-GU---UGUAGUu----GCAC---UGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 82914 0.73 0.782982
Target:  5'- aGCUGCUCCAGCuccuUCAucugcuuguucacGCGgggGugGUUCc -3'
miRNA:   3'- -CGACGAGGUUGu---AGU-------------UGCa--CugCGAG- -5'
25568 5' -51.2 NC_005337.1 + 88237 0.66 0.985696
Target:  5'- gGCUGCUgCGaagACGUCGuGCGUGccgGCGCg- -3'
miRNA:   3'- -CGACGAgGU---UGUAGU-UGCAC---UGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.