miRNA display CGI


Results 61 - 80 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 5' -51.2 NC_005337.1 + 88309 0.68 0.949928
Target:  5'- --aGCUCgggGACGUCAGCGUGgACGC-Ca -3'
miRNA:   3'- cgaCGAGg--UUGUAGUUGCAC-UGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 89150 0.66 0.981809
Target:  5'- aGCUGC-CCGACGUCuGgGUGcucCGCgUCg -3'
miRNA:   3'- -CGACGaGGUUGUAGuUgCACu--GCG-AG- -5'
25568 5' -51.2 NC_005337.1 + 89812 0.66 0.987383
Target:  5'- aGCUGCUUgagagcgaCGACAcgCAGCagGUGGCGCg- -3'
miRNA:   3'- -CGACGAG--------GUUGUa-GUUG--CACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 90618 0.67 0.974563
Target:  5'- aGCaGCUUCAcgaaGUCGGCGUGGCuCUCc -3'
miRNA:   3'- -CGaCGAGGUug--UAGUUGCACUGcGAG- -5'
25568 5' -51.2 NC_005337.1 + 92842 0.69 0.940681
Target:  5'- aGCUGCU-CAACG-CGACGUucggcACGCUCc -3'
miRNA:   3'- -CGACGAgGUUGUaGUUGCAc----UGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 93809 0.67 0.978168
Target:  5'- cGCgGCUCCAGuuucgucugcggcguCGUCAAgggcCGUG-CGCUCc -3'
miRNA:   3'- -CGaCGAGGUU---------------GUAGUU----GCACuGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 94314 0.66 0.982644
Target:  5'- --gGCcgaCCAGCAggaUCGagcccacgaugaagcACGUGACGCUCa -3'
miRNA:   3'- cgaCGa--GGUUGU---AGU---------------UGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 95937 0.7 0.899445
Target:  5'- cGC-GCUCCAcguccagccagacGCGUCGGuCGUuGCGCUCg -3'
miRNA:   3'- -CGaCGAGGU-------------UGUAGUU-GCAcUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 96829 0.72 0.802921
Target:  5'- cCUGCgggugCgCAGCcgCGGCGUGGCGUUCc -3'
miRNA:   3'- cGACGa----G-GUUGuaGUUGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 97088 0.68 0.945433
Target:  5'- uGCgUGC-CCAACcgCAugcuggugccGCaGUGGCGCUCg -3'
miRNA:   3'- -CG-ACGaGGUUGuaGU----------UG-CACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 99083 1.13 0.003574
Target:  5'- aGCUGCUCCAACAUCAACGUGACGCUCg -3'
miRNA:   3'- -CGACGAGGUUGUAGUUGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 99342 0.75 0.639077
Target:  5'- cGCUGCUUCAugcgcgugaaggGCAUCGACuUGACGCcCg -3'
miRNA:   3'- -CGACGAGGU------------UGUAGUUGcACUGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 99706 0.72 0.83876
Target:  5'- cGCUGCgcgcggCCAuCGUC-GCGgacagGACGCUCu -3'
miRNA:   3'- -CGACGa-----GGUuGUAGuUGCa----CUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 100330 0.74 0.692375
Target:  5'- --cGCUCU-ACAUCGACGUGGCGgaCg -3'
miRNA:   3'- cgaCGAGGuUGUAGUUGCACUGCgaG- -5'
25568 5' -51.2 NC_005337.1 + 104116 0.66 0.979591
Target:  5'- cGCUaCUCCGACAUCuaccccgcgcGCGUGgaGCGCg- -3'
miRNA:   3'- -CGAcGAGGUUGUAGu---------UGCAC--UGCGag -5'
25568 5' -51.2 NC_005337.1 + 104955 0.67 0.977179
Target:  5'- uGCUGCUcaccgacuaCCGGCAcgugagCGGCGUGAugacccUGCUCu -3'
miRNA:   3'- -CGACGA---------GGUUGUa-----GUUGCACU------GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 105326 0.68 0.95816
Target:  5'- aGUUGC-CCAGCAcgugCGGCGgcggGAgGCUCc -3'
miRNA:   3'- -CGACGaGGUUGUa---GUUGCa---CUgCGAG- -5'
25568 5' -51.2 NC_005337.1 + 106094 0.68 0.961907
Target:  5'- gGCaUGCUCUAggGCAcCAGCG-GACGCa- -3'
miRNA:   3'- -CG-ACGAGGU--UGUaGUUGCaCUGCGag -5'
25568 5' -51.2 NC_005337.1 + 107954 0.72 0.83876
Target:  5'- uGCUGCUggacaaCCGGacCGUCAugGUG-CGCUCc -3'
miRNA:   3'- -CGACGA------GGUU--GUAGUugCACuGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 110005 0.71 0.871313
Target:  5'- aGCUGCUCCAGacUCAGCGUcgggagcauGAUGUUg -3'
miRNA:   3'- -CGACGAGGUUguAGUUGCA---------CUGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.