miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 5' -51.2 NC_005337.1 + 133659 0.68 0.95816
Target:  5'- cGCUGgacgCCGACGcggaguUCGccuGCGUGGCGUUCg -3'
miRNA:   3'- -CGACga--GGUUGU------AGU---UGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 133659 0.68 0.95816
Target:  5'- cGCUGgacgCCGACGcggaguUCGccuGCGUGGCGUUCg -3'
miRNA:   3'- -CGACga--GGUUGU------AGU---UGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 133168 0.66 0.979591
Target:  5'- gGCUGCUcCCGGCggCGGCGcuGCGC-Cg -3'
miRNA:   3'- -CGACGA-GGUUGuaGUUGCacUGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 133168 0.66 0.979591
Target:  5'- gGCUGCUcCCGGCggCGGCGcuGCGC-Cg -3'
miRNA:   3'- -CGACGA-GGUUGuaGUUGCacUGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 132278 0.71 0.86351
Target:  5'- uGCUGCUgCGGuCGUcCGACGcGACGCUg -3'
miRNA:   3'- -CGACGAgGUU-GUA-GUUGCaCUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 131596 0.67 0.974563
Target:  5'- cGCaGCUCCgGACGUCcuGCGggcugGACGaCUCu -3'
miRNA:   3'- -CGaCGAGG-UUGUAGu-UGCa----CUGC-GAG- -5'
25568 5' -51.2 NC_005337.1 + 130697 0.69 0.927108
Target:  5'- cGCUGCUCaagucccCGUCcGCGUGcguggagcucgucgaGCGCUCg -3'
miRNA:   3'- -CGACGAGguu----GUAGuUGCAC---------------UGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 130542 0.66 0.987383
Target:  5'- cGCggGCgCCAACGUCAACGacggGAUcgGCUUc -3'
miRNA:   3'- -CGa-CGaGGUUGUAGUUGCa---CUG--CGAG- -5'
25568 5' -51.2 NC_005337.1 + 130339 0.66 0.979591
Target:  5'- cGCUGCUgCAGC-UCGACGc--CGCUa -3'
miRNA:   3'- -CGACGAgGUUGuAGUUGCacuGCGAg -5'
25568 5' -51.2 NC_005337.1 + 128007 0.73 0.751373
Target:  5'- gGCUGCUCCuggacgccggcgccAGCGUCAGC--GACGCUg -3'
miRNA:   3'- -CGACGAGG--------------UUGUAGUUGcaCUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 125945 0.71 0.855479
Target:  5'- cGCUGCUCgAggcggGCGUgGGCGUGaACGCg- -3'
miRNA:   3'- -CGACGAGgU-----UGUAgUUGCAC-UGCGag -5'
25568 5' -51.2 NC_005337.1 + 125523 0.67 0.973737
Target:  5'- gGCUGCUcgugcgguacggcgCCGACAUCcgcgccaaggacGACGUGGgGCg- -3'
miRNA:   3'- -CGACGA--------------GGUUGUAG------------UUGCACUgCGag -5'
25568 5' -51.2 NC_005337.1 + 125236 0.69 0.930398
Target:  5'- aGCuUGUUUCGGCGccUCAGCuacgGACGCUCa -3'
miRNA:   3'- -CG-ACGAGGUUGU--AGUUGca--CUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 123588 0.66 0.983646
Target:  5'- cGCUGCUgCGagcugcgGCcgC-ACGUGccGCGCUCg -3'
miRNA:   3'- -CGACGAgGU-------UGuaGuUGCAC--UGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 122799 0.67 0.971735
Target:  5'- uGCUGCgcgcggCCAucgACcgCAGCGUG-CGCg- -3'
miRNA:   3'- -CGACGa-----GGU---UGuaGUUGCACuGCGag -5'
25568 5' -51.2 NC_005337.1 + 122564 0.69 0.930398
Target:  5'- uGCUGCUCCAGCcg-AGgGUGAaccggcUGCUCu -3'
miRNA:   3'- -CGACGAGGUUGuagUUgCACU------GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 120385 0.73 0.783947
Target:  5'- cGCUGgUCCc-CGUCAACGUGuacACGCUg -3'
miRNA:   3'- -CGACgAGGuuGUAGUUGCAC---UGCGAg -5'
25568 5' -51.2 NC_005337.1 + 119369 0.71 0.878881
Target:  5'- aGCUGCuUCCAcCAUCGGCGccGCGC-Ca -3'
miRNA:   3'- -CGACG-AGGUuGUAGUUGCacUGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 117788 0.72 0.815804
Target:  5'- gGCU-CUCCAGCAUguuagugggcaugaaCGGCGUGGCGCcCg -3'
miRNA:   3'- -CGAcGAGGUUGUA---------------GUUGCACUGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 115973 0.67 0.970844
Target:  5'- cGCUGUUCCGcugccuguucgugcACAUCGcgcuggGCGUG-CgGCUCa -3'
miRNA:   3'- -CGACGAGGU--------------UGUAGU------UGCACuG-CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.