Results 41 - 60 of 105 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 92842 | 0.69 | 0.940681 |
Target: 5'- aGCUGCU-CAACG-CGACGUucggcACGCUCc -3' miRNA: 3'- -CGACGAgGUUGUaGUUGCAc----UGCGAG- -5' |
|||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 90618 | 0.67 | 0.974563 |
Target: 5'- aGCaGCUUCAcgaaGUCGGCGUGGCuCUCc -3' miRNA: 3'- -CGaCGAGGUug--UAGUUGCACUGcGAG- -5' |
|||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 89812 | 0.66 | 0.987383 |
Target: 5'- aGCUGCUUgagagcgaCGACAcgCAGCagGUGGCGCg- -3' miRNA: 3'- -CGACGAG--------GUUGUa-GUUG--CACUGCGag -5' |
|||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 89150 | 0.66 | 0.981809 |
Target: 5'- aGCUGC-CCGACGUCuGgGUGcucCGCgUCg -3' miRNA: 3'- -CGACGaGGUUGUAGuUgCACu--GCG-AG- -5' |
|||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 88309 | 0.68 | 0.949928 |
Target: 5'- --aGCUCgggGACGUCAGCGUGgACGC-Ca -3' miRNA: 3'- cgaCGAGg--UUGUAGUUGCAC-UGCGaG- -5' |
|||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 88237 | 0.66 | 0.985696 |
Target: 5'- gGCUGCUgCGaagACGUCGuGCGUGccgGCGCg- -3' miRNA: 3'- -CGACGAgGU---UGUAGU-UGCAC---UGCGag -5' |
|||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 82914 | 0.73 | 0.782982 |
Target: 5'- aGCUGCUCCAGCuccuUCAucugcuuguucacGCGgggGugGUUCc -3' miRNA: 3'- -CGACGAGGUUGu---AGU-------------UGCa--CugCGAG- -5' |
|||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 80412 | 0.66 | 0.981809 |
Target: 5'- uCUGCUCgCGgugGCGUCGcugguCGUGcccGCGCUCg -3' miRNA: 3'- cGACGAG-GU---UGUAGUu----GCAC---UGCGAG- -5' |
|||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 79399 | 0.69 | 0.924863 |
Target: 5'- aGCUGCUCCAcgcggcggcgcgGCAUCucgaugAACGccgGGCGCg- -3' miRNA: 3'- -CGACGAGGU------------UGUAG------UUGCa--CUGCGag -5' |
|||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 79237 | 0.66 | 0.979591 |
Target: 5'- -aUGC-CCAGCAgguACGUGA-GCUCg -3' miRNA: 3'- cgACGaGGUUGUaguUGCACUgCGAG- -5' |
|||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 78333 | 0.7 | 0.893287 |
Target: 5'- aGCUGCaggUCCAGCcggggcgcgGUCucgaaggugggcAGCGUGACGCUg -3' miRNA: 3'- -CGACG---AGGUUG---------UAG------------UUGCACUGCGAg -5' |
|||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 75738 | 0.74 | 0.745304 |
Target: 5'- cGCUGCgggacgacaacgucaCCAGCAUCGaggGCGUGAuuccgcCGCUCg -3' miRNA: 3'- -CGACGa--------------GGUUGUAGU---UGCACU------GCGAG- -5' |
|||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 75537 | 0.67 | 0.968688 |
Target: 5'- uGCUGCUCCGguGCAcCcGCGccGGCGCg- -3' miRNA: 3'- -CGACGAGGU--UGUaGuUGCa-CUGCGag -5' |
|||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 74759 | 0.67 | 0.978168 |
Target: 5'- cGCUGUucUCCuuccugggcguauucGACAUCAACGUGGcCGacaUCu -3' miRNA: 3'- -CGACG--AGG---------------UUGUAGUUGCACU-GCg--AG- -5' |
|||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 74544 | 0.66 | 0.979591 |
Target: 5'- cGC-GCUCCGccGCG-CGgcGCGUGAUGCUg -3' miRNA: 3'- -CGaCGAGGU--UGUaGU--UGCACUGCGAg -5' |
|||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 73960 | 0.66 | 0.983841 |
Target: 5'- -gUGC-CCug---CAACGUGACGUUCa -3' miRNA: 3'- cgACGaGGuuguaGUUGCACUGCGAG- -5' |
|||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 73296 | 0.68 | 0.945433 |
Target: 5'- cGC-GCUCCccu-UCGACGUGAagaaGCUCu -3' miRNA: 3'- -CGaCGAGGuuguAGUUGCACUg---CGAG- -5' |
|||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 72418 | 0.67 | 0.974563 |
Target: 5'- cCUGCUCaacgAGCA-CGGCGUGAgcgUGCUCc -3' miRNA: 3'- cGACGAGg---UUGUaGUUGCACU---GCGAG- -5' |
|||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 72025 | 0.71 | 0.86351 |
Target: 5'- --gGUUCCgAACGUCAACGUGAUGaacaUCu -3' miRNA: 3'- cgaCGAGG-UUGUAGUUGCACUGCg---AG- -5' |
|||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 69894 | 0.66 | 0.985696 |
Target: 5'- cGCcGCUCCGACA---ACGUGcuccugcgcGCGCUg -3' miRNA: 3'- -CGaCGAGGUUGUaguUGCAC---------UGCGAg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home