Results 101 - 105 of 105 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 25568 | 5' | -51.2 | NC_005337.1 | + | 10072 | 0.69 | 0.940681 |
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Target: 5'- cGCUGUcggaguccuccUCCGACGaCGugGUGGCGUa- -3' miRNA: 3'- -CGACG-----------AGGUUGUaGUugCACUGCGag -5' |
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| 25568 | 5' | -51.2 | NC_005337.1 | + | 9476 | 0.72 | 0.812159 |
|
Target: 5'- cGCUGCggccccacUCCAGCG-CGGCGaUGACGCg- -3' miRNA: 3'- -CGACG--------AGGUUGUaGUUGC-ACUGCGag -5' |
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| 25568 | 5' | -51.2 | NC_005337.1 | + | 8560 | 0.67 | 0.974563 |
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Target: 5'- aGCgUGCgCaguACGUCGACGUcGACGUUCc -3' miRNA: 3'- -CG-ACGaGgu-UGUAGUUGCA-CUGCGAG- -5' |
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| 25568 | 5' | -51.2 | NC_005337.1 | + | 2817 | 0.67 | 0.971735 |
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Target: 5'- cGCUGCUgCAggACGUC-ACGguaGAUGCUg -3' miRNA: 3'- -CGACGAgGU--UGUAGuUGCa--CUGCGAg -5' |
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| 25568 | 5' | -51.2 | NC_005337.1 | + | 1959 | 0.66 | 0.983841 |
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Target: 5'- cGCUGC-CC-GCGUCAGCGagcagccgGACgaGCUCc -3' miRNA: 3'- -CGACGaGGuUGUAGUUGCa-------CUG--CGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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