miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 5' -51.2 NC_005337.1 + 122564 0.69 0.930398
Target:  5'- uGCUGCUCCAGCcg-AGgGUGAaccggcUGCUCu -3'
miRNA:   3'- -CGACGAGGUUGuagUUgCACU------GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 72025 0.71 0.86351
Target:  5'- --gGUUCCgAACGUCAACGUGAUGaacaUCu -3'
miRNA:   3'- cgaCGAGG-UUGUAGUUGCACUGCg---AG- -5'
25568 5' -51.2 NC_005337.1 + 119369 0.71 0.878881
Target:  5'- aGCUGCuUCCAcCAUCGGCGccGCGC-Ca -3'
miRNA:   3'- -CGACG-AGGUuGUAGUUGCacUGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 14653 0.7 0.889069
Target:  5'- gGCgucCUCCGGCAUCAGCGcggcgagacaggaguUGcaGCGCUCg -3'
miRNA:   3'- -CGac-GAGGUUGUAGUUGC---------------AC--UGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 42649 0.7 0.893287
Target:  5'- gGCUGCUCCGuGCGUgucUGUGGCGCg- -3'
miRNA:   3'- -CGACGAGGU-UGUAguuGCACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 78333 0.7 0.893287
Target:  5'- aGCUGCaggUCCAGCcggggcgcgGUCucgaaggugggcAGCGUGACGCUg -3'
miRNA:   3'- -CGACG---AGGUUG---------UAG------------UUGCACUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 39860 0.7 0.906692
Target:  5'- --gGCUUCGGCAUCAGCGUcuGcCGCUg -3'
miRNA:   3'- cgaCGAGGUUGUAGUUGCA--CuGCGAg -5'
25568 5' -51.2 NC_005337.1 + 42780 0.69 0.924863
Target:  5'- -gUGCUCgGGCggCAGCGUGACcUUCg -3'
miRNA:   3'- cgACGAGgUUGuaGUUGCACUGcGAG- -5'
25568 5' -51.2 NC_005337.1 + 79399 0.69 0.924863
Target:  5'- aGCUGCUCCAcgcggcggcgcgGCAUCucgaugAACGccgGGCGCg- -3'
miRNA:   3'- -CGACGAGGU------------UGUAG------UUGCa--CUGCGag -5'
25568 5' -51.2 NC_005337.1 + 125945 0.71 0.855479
Target:  5'- cGCUGCUCgAggcggGCGUgGGCGUGaACGCg- -3'
miRNA:   3'- -CGACGAGgU-----UGUAgUUGCAC-UGCGag -5'
25568 5' -51.2 NC_005337.1 + 99706 0.72 0.83876
Target:  5'- cGCUGCgcgcggCCAuCGUC-GCGgacagGACGCUCu -3'
miRNA:   3'- -CGACGa-----GGUuGUAGuUGCa----CUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 33399 0.72 0.821217
Target:  5'- gGCUGCUCCAugcgcguCAUCGGCacgGUGAgCGCg- -3'
miRNA:   3'- -CGACGAGGUu------GUAGUUG---CACU-GCGag -5'
25568 5' -51.2 NC_005337.1 + 99342 0.75 0.639077
Target:  5'- cGCUGCUUCAugcgcgugaaggGCAUCGACuUGACGCcCg -3'
miRNA:   3'- -CGACGAGGU------------UGUAGUUGcACUGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 110825 0.74 0.692375
Target:  5'- cGUUGCagCAGCAgagguGCGUGAUGCUCg -3'
miRNA:   3'- -CGACGagGUUGUagu--UGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 128007 0.73 0.751373
Target:  5'- gGCUGCUCCuggacgccggcgccAGCGUCAGC--GACGCUg -3'
miRNA:   3'- -CGACGAGG--------------UUGUAGUUGcaCUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 55199 0.73 0.774231
Target:  5'- uGCUGCg-CAGCuUCGugGUGGCGCg- -3'
miRNA:   3'- -CGACGagGUUGuAGUugCACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 82914 0.73 0.782982
Target:  5'- aGCUGCUCCAGCuccuUCAucugcuuguucacGCGgggGugGUUCc -3'
miRNA:   3'- -CGACGAGGUUGu---AGU-------------UGCa--CugCGAG- -5'
25568 5' -51.2 NC_005337.1 + 96829 0.72 0.802921
Target:  5'- cCUGCgggugCgCAGCcgCGGCGUGGCGUUCc -3'
miRNA:   3'- cGACGa----G-GUUGuaGUUGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 42416 0.72 0.802921
Target:  5'- cGCUGUgcgCCGGCuUCGGCGUGA-GCUUc -3'
miRNA:   3'- -CGACGa--GGUUGuAGUUGCACUgCGAG- -5'
25568 5' -51.2 NC_005337.1 + 9476 0.72 0.812159
Target:  5'- cGCUGCggccccacUCCAGCG-CGGCGaUGACGCg- -3'
miRNA:   3'- -CGACG--------AGGUUGUaGUUGC-ACUGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.