miRNA display CGI


Results 41 - 60 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 5' -51.2 NC_005337.1 + 99342 0.75 0.639077
Target:  5'- cGCUGCUUCAugcgcgugaaggGCAUCGACuUGACGCcCg -3'
miRNA:   3'- -CGACGAGGU------------UGUAGUUGcACUGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 48258 0.76 0.606949
Target:  5'- aGgUGCUCCA---UCGGCGUGACGCa- -3'
miRNA:   3'- -CgACGAGGUuguAGUUGCACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 72025 0.71 0.86351
Target:  5'- --gGUUCCgAACGUCAACGUGAUGaacaUCu -3'
miRNA:   3'- cgaCGAGG-UUGUAGUUGCACUGCg---AG- -5'
25568 5' -51.2 NC_005337.1 + 119369 0.71 0.878881
Target:  5'- aGCUGCuUCCAcCAUCGGCGccGCGC-Ca -3'
miRNA:   3'- -CGACG-AGGUuGUAGUUGCacUGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 14653 0.7 0.889069
Target:  5'- gGCgucCUCCGGCAUCAGCGcggcgagacaggaguUGcaGCGCUCg -3'
miRNA:   3'- -CGac-GAGGUUGUAGUUGC---------------AC--UGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 88309 0.68 0.949928
Target:  5'- --aGCUCgggGACGUCAGCGUGgACGC-Ca -3'
miRNA:   3'- cgaCGAGg--UUGUAGUUGCAC-UGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 73296 0.68 0.945433
Target:  5'- cGC-GCUCCccu-UCGACGUGAagaaGCUCu -3'
miRNA:   3'- -CGaCGAGGuuguAGUUGCACUg---CGAG- -5'
25568 5' -51.2 NC_005337.1 + 69763 0.68 0.945433
Target:  5'- uGCaUGCUCUcgGGCuUCAcCGUGACGCg- -3'
miRNA:   3'- -CG-ACGAGG--UUGuAGUuGCACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 97088 0.68 0.945433
Target:  5'- uGCgUGC-CCAACcgCAugcuggugccGCaGUGGCGCUCg -3'
miRNA:   3'- -CG-ACGaGGUUGuaGU----------UG-CACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 38854 0.69 0.940192
Target:  5'- cGCUGCcCC-------GCGUGACGCUCg -3'
miRNA:   3'- -CGACGaGGuuguaguUGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 31232 0.69 0.93567
Target:  5'- cGCUGCagCAGCAUCAGCagGUcGCgGCUCc -3'
miRNA:   3'- -CGACGagGUUGUAGUUG--CAcUG-CGAG- -5'
25568 5' -51.2 NC_005337.1 + 122564 0.69 0.930398
Target:  5'- uGCUGCUCCAGCcg-AGgGUGAaccggcUGCUCu -3'
miRNA:   3'- -CGACGAGGUUGuagUUgCACU------GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 42649 0.7 0.893287
Target:  5'- gGCUGCUCCGuGCGUgucUGUGGCGCg- -3'
miRNA:   3'- -CGACGAGGU-UGUAguuGCACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 78333 0.7 0.893287
Target:  5'- aGCUGCaggUCCAGCcggggcgcgGUCucgaaggugggcAGCGUGACGCUg -3'
miRNA:   3'- -CGACG---AGGUUG---------UAG------------UUGCACUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 39860 0.7 0.906692
Target:  5'- --gGCUUCGGCAUCAGCGUcuGcCGCUg -3'
miRNA:   3'- cgaCGAGGUUGUAGUUGCA--CuGCGAg -5'
25568 5' -51.2 NC_005337.1 + 42780 0.69 0.924863
Target:  5'- -gUGCUCgGGCggCAGCGUGACcUUCg -3'
miRNA:   3'- cgACGAGgUUGuaGUUGCACUGcGAG- -5'
25568 5' -51.2 NC_005337.1 + 79399 0.69 0.924863
Target:  5'- aGCUGCUCCAcgcggcggcgcgGCAUCucgaugAACGccgGGCGCg- -3'
miRNA:   3'- -CGACGAGGU------------UGUAG------UUGCa--CUGCGag -5'
25568 5' -51.2 NC_005337.1 + 130542 0.66 0.987383
Target:  5'- cGCggGCgCCAACGUCAACGacggGAUcgGCUUc -3'
miRNA:   3'- -CGa-CGaGGUUGUAGUUGCa---CUG--CGAG- -5'
25568 5' -51.2 NC_005337.1 + 110482 0.78 0.510459
Target:  5'- uGCgGCgcagguaccgggCCAGC-UCGACGUGGCGCUCg -3'
miRNA:   3'- -CGaCGa-----------GGUUGuAGUUGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 100330 0.74 0.692375
Target:  5'- --cGCUCU-ACAUCGACGUGGCGgaCg -3'
miRNA:   3'- cgaCGAGGuUGUAGUUGCACUGCgaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.