miRNA display CGI


Results 61 - 80 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 5' -51.2 NC_005337.1 + 64196 0.7 0.900117
Target:  5'- cGCUcgcGCUCCGACAgcUCGAaGUaGACGCUg -3'
miRNA:   3'- -CGA---CGAGGUUGU--AGUUgCA-CUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 43435 0.69 0.919067
Target:  5'- cGCUG-UCCAGCAUCAACcUGAU-CUCc -3'
miRNA:   3'- -CGACgAGGUUGUAGUUGcACUGcGAG- -5'
25568 5' -51.2 NC_005337.1 + 130697 0.69 0.927108
Target:  5'- cGCUGCUCaagucccCGUCcGCGUGcguggagcucgucgaGCGCUCg -3'
miRNA:   3'- -CGACGAGguu----GUAGuUGCAC---------------UGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 125236 0.69 0.930398
Target:  5'- aGCuUGUUUCGGCGccUCAGCuacgGACGCUCa -3'
miRNA:   3'- -CG-ACGAGGUUGU--AGUUGca--CUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 92842 0.69 0.940681
Target:  5'- aGCUGCU-CAACG-CGACGUucggcACGCUCc -3'
miRNA:   3'- -CGACGAgGUUGUaGUUGCAc----UGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 10072 0.69 0.940681
Target:  5'- cGCUGUcggaguccuccUCCGACGaCGugGUGGCGUa- -3'
miRNA:   3'- -CGACG-----------AGGUUGUaGUugCACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 133659 0.68 0.95816
Target:  5'- cGCUGgacgCCGACGcggaguUCGccuGCGUGGCGUUCg -3'
miRNA:   3'- -CGACga--GGUUGU------AGU---UGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 110005 0.71 0.871313
Target:  5'- aGCUGCUCCAGacUCAGCGUcgggagcauGAUGUUg -3'
miRNA:   3'- -CGACGAGGUUguAGUUGCA---------CUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 132278 0.71 0.86351
Target:  5'- uGCUGCUgCGGuCGUcCGACGcGACGCUg -3'
miRNA:   3'- -CGACGAgGUU-GUA-GUUGCaCUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 107954 0.72 0.83876
Target:  5'- uGCUGCUggacaaCCGGacCGUCAugGUG-CGCUCc -3'
miRNA:   3'- -CGACGA------GGUU--GUAGUugCACuGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 130542 0.66 0.987383
Target:  5'- cGCggGCgCCAACGUCAACGacggGAUcgGCUUc -3'
miRNA:   3'- -CGa-CGaGGUUGUAGUUGCa---CUG--CGAG- -5'
25568 5' -51.2 NC_005337.1 + 110482 0.78 0.510459
Target:  5'- uGCgGCgcagguaccgggCCAGC-UCGACGUGGCGCUCg -3'
miRNA:   3'- -CGaCGa-----------GGUUGuAGUUGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 100330 0.74 0.692375
Target:  5'- --cGCUCU-ACAUCGACGUGGCGgaCg -3'
miRNA:   3'- cgaCGAGGuUGUAGUUGCACUGCgaG- -5'
25568 5' -51.2 NC_005337.1 + 15193 0.74 0.702909
Target:  5'- -gUGUUCCAGCAU-AGCGUccaGGCGCUCg -3'
miRNA:   3'- cgACGAGGUUGUAgUUGCA---CUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 44634 0.74 0.702909
Target:  5'- cGCUGCUCCugaucgugcGCcgCAGCG-GGCGCUa -3'
miRNA:   3'- -CGACGAGGu--------UGuaGUUGCaCUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 75738 0.74 0.745304
Target:  5'- cGCUGCgggacgacaacgucaCCAGCAUCGaggGCGUGAuuccgcCGCUCg -3'
miRNA:   3'- -CGACGa--------------GGUUGUAGU---UGCACU------GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 120385 0.73 0.783947
Target:  5'- cGCUGgUCCc-CGUCAACGUGuacACGCUg -3'
miRNA:   3'- -CGACgAGGuuGUAGUUGCAC---UGCGAg -5'
25568 5' -51.2 NC_005337.1 + 117788 0.72 0.815804
Target:  5'- gGCU-CUCCAGCAUguuagugggcaugaaCGGCGUGGCGCcCg -3'
miRNA:   3'- -CGAcGAGGUUGUA---------------GUUGCACUGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 14368 0.72 0.829209
Target:  5'- uGCUGCUCUaugucguGACA-CAGCGUGccuauguCGCUCu -3'
miRNA:   3'- -CGACGAGG-------UUGUaGUUGCACu------GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 46850 0.72 0.830087
Target:  5'- cGCUGa-CCGugAaCGACGUGGCGCUg -3'
miRNA:   3'- -CGACgaGGUugUaGUUGCACUGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.