Results 81 - 100 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25568 | 5' | -51.2 | NC_005337.1 | + | 46850 | 0.72 | 0.830087 |
Target: 5'- cGCUGa-CCGugAaCGACGUGGCGCUg -3' miRNA: 3'- -CGACgaGGUugUaGUUGCACUGCGAg -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 14368 | 0.72 | 0.829209 |
Target: 5'- uGCUGCUCUaugucguGACA-CAGCGUGccuauguCGCUCu -3' miRNA: 3'- -CGACGAGG-------UUGUaGUUGCACu------GCGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 117788 | 0.72 | 0.815804 |
Target: 5'- gGCU-CUCCAGCAUguuagugggcaugaaCGGCGUGGCGCcCg -3' miRNA: 3'- -CGAcGAGGUUGUA---------------GUUGCACUGCGaG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 120385 | 0.73 | 0.783947 |
Target: 5'- cGCUGgUCCc-CGUCAACGUGuacACGCUg -3' miRNA: 3'- -CGACgAGGuuGUAGUUGCAC---UGCGAg -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 75738 | 0.74 | 0.745304 |
Target: 5'- cGCUGCgggacgacaacgucaCCAGCAUCGaggGCGUGAuuccgcCGCUCg -3' miRNA: 3'- -CGACGa--------------GGUUGUAGU---UGCACU------GCGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 44634 | 0.74 | 0.702909 |
Target: 5'- cGCUGCUCCugaucgugcGCcgCAGCG-GGCGCUa -3' miRNA: 3'- -CGACGAGGu--------UGuaGUUGCaCUGCGAg -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 15193 | 0.74 | 0.702909 |
Target: 5'- -gUGUUCCAGCAU-AGCGUccaGGCGCUCg -3' miRNA: 3'- cgACGAGGUUGUAgUUGCA---CUGCGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 100330 | 0.74 | 0.692375 |
Target: 5'- --cGCUCU-ACAUCGACGUGGCGgaCg -3' miRNA: 3'- cgaCGAGGuUGUAGUUGCACUGCgaG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 110482 | 0.78 | 0.510459 |
Target: 5'- uGCgGCgcagguaccgggCCAGC-UCGACGUGGCGCUCg -3' miRNA: 3'- -CGaCGa-----------GGUUGuAGUUGCACUGCGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 107954 | 0.72 | 0.83876 |
Target: 5'- uGCUGCUggacaaCCGGacCGUCAugGUG-CGCUCc -3' miRNA: 3'- -CGACGA------GGUU--GUAGUugCACuGCGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 132278 | 0.71 | 0.86351 |
Target: 5'- uGCUGCUgCGGuCGUcCGACGcGACGCUg -3' miRNA: 3'- -CGACGAgGUU-GUA-GUUGCaCUGCGAg -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 92842 | 0.69 | 0.940681 |
Target: 5'- aGCUGCU-CAACG-CGACGUucggcACGCUCc -3' miRNA: 3'- -CGACGAgGUUGUaGUUGCAc----UGCGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 125236 | 0.69 | 0.930398 |
Target: 5'- aGCuUGUUUCGGCGccUCAGCuacgGACGCUCa -3' miRNA: 3'- -CG-ACGAGGUUGU--AGUUGca--CUGCGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 130697 | 0.69 | 0.927108 |
Target: 5'- cGCUGCUCaagucccCGUCcGCGUGcguggagcucgucgaGCGCUCg -3' miRNA: 3'- -CGACGAGguu----GUAGuUGCAC---------------UGCGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 43435 | 0.69 | 0.919067 |
Target: 5'- cGCUG-UCCAGCAUCAACcUGAU-CUCc -3' miRNA: 3'- -CGACgAGGUUGUAGUUGcACUGcGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 64196 | 0.7 | 0.900117 |
Target: 5'- cGCUcgcGCUCCGACAgcUCGAaGUaGACGCUg -3' miRNA: 3'- -CGA---CGAGGUUGU--AGUUgCA-CUGCGAg -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 43540 | 0.7 | 0.900117 |
Target: 5'- aGCUGCUCC-GCGUCGugGac-CGCUg -3' miRNA: 3'- -CGACGAGGuUGUAGUugCacuGCGAg -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 23461 | 0.7 | 0.900117 |
Target: 5'- uGCUGCUgCAACGUguccgacucCGACGUGGagaacgUGCUCc -3' miRNA: 3'- -CGACGAgGUUGUA---------GUUGCACU------GCGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 95937 | 0.7 | 0.899445 |
Target: 5'- cGC-GCUCCAcguccagccagacGCGUCGGuCGUuGCGCUCg -3' miRNA: 3'- -CGaCGAGGU-------------UGUAGUU-GCAcUGCGAG- -5' |
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25568 | 5' | -51.2 | NC_005337.1 | + | 110005 | 0.71 | 0.871313 |
Target: 5'- aGCUGCUCCAGacUCAGCGUcgggagcauGAUGUUg -3' miRNA: 3'- -CGACGAGGUUguAGUUGCA---------CUGCGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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