Results 101 - 105 of 105 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 25568 | 5' | -51.2 | NC_005337.1 | + | 64196 | 0.7 | 0.900117 |
|
Target: 5'- cGCUcgcGCUCCGACAgcUCGAaGUaGACGCUg -3' miRNA: 3'- -CGA---CGAGGUUGU--AGUUgCA-CUGCGAg -5' |
|||||||
| 25568 | 5' | -51.2 | NC_005337.1 | + | 43540 | 0.7 | 0.900117 |
|
Target: 5'- aGCUGCUCC-GCGUCGugGac-CGCUg -3' miRNA: 3'- -CGACGAGGuUGUAGUugCacuGCGAg -5' |
|||||||
| 25568 | 5' | -51.2 | NC_005337.1 | + | 23461 | 0.7 | 0.900117 |
|
Target: 5'- uGCUGCUgCAACGUguccgacucCGACGUGGagaacgUGCUCc -3' miRNA: 3'- -CGACGAgGUUGUA---------GUUGCACU------GCGAG- -5' |
|||||||
| 25568 | 5' | -51.2 | NC_005337.1 | + | 95937 | 0.7 | 0.899445 |
|
Target: 5'- cGC-GCUCCAcguccagccagacGCGUCGGuCGUuGCGCUCg -3' miRNA: 3'- -CGaCGAGGU-------------UGUAGUU-GCAcUGCGAG- -5' |
|||||||
| 25568 | 5' | -51.2 | NC_005337.1 | + | 99083 | 1.13 | 0.003574 |
|
Target: 5'- aGCUGCUCCAACAUCAACGUGACGCUCg -3' miRNA: 3'- -CGACGAGGUUGUAGUUGCACUGCGAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home