miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 5' -51.2 NC_005337.1 + 133659 0.68 0.95816
Target:  5'- cGCUGgacgCCGACGcggaguUCGccuGCGUGGCGUUCg -3'
miRNA:   3'- -CGACga--GGUUGU------AGU---UGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 125236 0.69 0.930398
Target:  5'- aGCuUGUUUCGGCGccUCAGCuacgGACGCUCa -3'
miRNA:   3'- -CG-ACGAGGUUGU--AGUUGca--CUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 107954 0.72 0.83876
Target:  5'- uGCUGCUggacaaCCGGacCGUCAugGUG-CGCUCc -3'
miRNA:   3'- -CGACGA------GGUU--GUAGUugCACuGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 15193 0.74 0.702909
Target:  5'- -gUGUUCCAGCAU-AGCGUccaGGCGCUCg -3'
miRNA:   3'- cgACGAGGUUGUAgUUGCA---CUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 74759 0.67 0.978168
Target:  5'- cGCUGUucUCCuuccugggcguauucGACAUCAACGUGGcCGacaUCu -3'
miRNA:   3'- -CGACG--AGG---------------UUGUAGUUGCACU-GCg--AG- -5'
25568 5' -51.2 NC_005337.1 + 115378 0.67 0.968688
Target:  5'- cGCgacGCUCCAgcGCGUguACGacACGCUCc -3'
miRNA:   3'- -CGa--CGAGGU--UGUAguUGCacUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 43435 0.69 0.919067
Target:  5'- cGCUG-UCCAGCAUCAACcUGAU-CUCc -3'
miRNA:   3'- -CGACgAGGUUGUAGUUGcACUGcGAG- -5'
25568 5' -51.2 NC_005337.1 + 100330 0.74 0.692375
Target:  5'- --cGCUCU-ACAUCGACGUGGCGgaCg -3'
miRNA:   3'- cgaCGAGGuUGUAGUUGCACUGCgaG- -5'
25568 5' -51.2 NC_005337.1 + 75537 0.67 0.968688
Target:  5'- uGCUGCUCCGguGCAcCcGCGccGGCGCg- -3'
miRNA:   3'- -CGACGAGGU--UGUaGuUGCa-CUGCGag -5'
25568 5' -51.2 NC_005337.1 + 110482 0.78 0.510459
Target:  5'- uGCgGCgcagguaccgggCCAGC-UCGACGUGGCGCUCg -3'
miRNA:   3'- -CGaCGa-----------GGUUGuAGUUGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 130697 0.69 0.927108
Target:  5'- cGCUGCUCaagucccCGUCcGCGUGcguggagcucgucgaGCGCUCg -3'
miRNA:   3'- -CGACGAGguu----GUAGuUGCAC---------------UGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 10226 0.68 0.961907
Target:  5'- gGCaGCUCCAGCcgCGGCa-GGCGCg- -3'
miRNA:   3'- -CGaCGAGGUUGuaGUUGcaCUGCGag -5'
25568 5' -51.2 NC_005337.1 + 23461 0.7 0.900117
Target:  5'- uGCUGCUgCAACGUguccgacucCGACGUGGagaacgUGCUCc -3'
miRNA:   3'- -CGACGAgGUUGUA---------GUUGCACU------GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 132278 0.71 0.86351
Target:  5'- uGCUGCUgCGGuCGUcCGACGcGACGCUg -3'
miRNA:   3'- -CGACGAgGUU-GUA-GUUGCaCUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 117788 0.72 0.815804
Target:  5'- gGCU-CUCCAGCAUguuagugggcaugaaCGGCGUGGCGCcCg -3'
miRNA:   3'- -CGAcGAGGUUGUA---------------GUUGCACUGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 44634 0.74 0.702909
Target:  5'- cGCUGCUCCugaucgugcGCcgCAGCG-GGCGCUa -3'
miRNA:   3'- -CGACGAGGu--------UGuaGUUGCaCUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 133168 0.66 0.979591
Target:  5'- gGCUGCUcCCGGCggCGGCGcuGCGC-Cg -3'
miRNA:   3'- -CGACGA-GGUUGuaGUUGCacUGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 93809 0.67 0.978168
Target:  5'- cGCgGCUCCAGuuucgucugcggcguCGUCAAgggcCGUG-CGCUCc -3'
miRNA:   3'- -CGaCGAGGUU---------------GUAGUU----GCACuGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 8560 0.67 0.974563
Target:  5'- aGCgUGCgCaguACGUCGACGUcGACGUUCc -3'
miRNA:   3'- -CG-ACGaGgu-UGUAGUUGCA-CUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 115973 0.67 0.970844
Target:  5'- cGCUGUUCCGcugccuguucgugcACAUCGcgcuggGCGUG-CgGCUCa -3'
miRNA:   3'- -CGACGAGGU--------------UGUAGU------UGCACuG-CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.