miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 5' -51.2 NC_005337.1 + 130339 0.66 0.979591
Target:  5'- cGCUGCUgCAGC-UCGACGc--CGCUa -3'
miRNA:   3'- -CGACGAgGUUGuAGUUGCacuGCGAg -5'
25568 5' -51.2 NC_005337.1 + 24280 0.66 0.981809
Target:  5'- aGCUGg-CCGGCGcUCAcgcaggGCGUGGUGCUCg -3'
miRNA:   3'- -CGACgaGGUUGU-AGU------UGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 39535 0.66 0.979591
Target:  5'- cGCggucgugGCUgCCGGCGcccCGGCG-GGCGCUCg -3'
miRNA:   3'- -CGa------CGA-GGUUGUa--GUUGCaCUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 104955 0.67 0.977179
Target:  5'- uGCUGCUcaccgacuaCCGGCAcgugagCGGCGUGAugacccUGCUCu -3'
miRNA:   3'- -CGACGA---------GGUUGUa-----GUUGCACU------GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 43675 0.67 0.972892
Target:  5'- aGCUGCUCUucGGCgccaugggguuccggGUCcACGUGA-GCUCg -3'
miRNA:   3'- -CGACGAGG--UUG---------------UAGuUGCACUgCGAG- -5'
25568 5' -51.2 NC_005337.1 + 75537 0.67 0.968688
Target:  5'- uGCUGCUCCGguGCAcCcGCGccGGCGCg- -3'
miRNA:   3'- -CGACGAGGU--UGUaGuUGCa-CUGCGag -5'
25568 5' -51.2 NC_005337.1 + 10226 0.68 0.961907
Target:  5'- gGCaGCUCCAGCcgCGGCa-GGCGCg- -3'
miRNA:   3'- -CGaCGAGGUUGuaGUUGcaCUGCGag -5'
25568 5' -51.2 NC_005337.1 + 130697 0.69 0.927108
Target:  5'- cGCUGCUCaagucccCGUCcGCGUGcguggagcucgucgaGCGCUCg -3'
miRNA:   3'- -CGACGAGguu----GUAGuUGCAC---------------UGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 89812 0.66 0.987383
Target:  5'- aGCUGCUUgagagcgaCGACAcgCAGCagGUGGCGCg- -3'
miRNA:   3'- -CGACGAG--------GUUGUa-GUUG--CACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 34625 0.66 0.988913
Target:  5'- cCUGCUCCu-CGUUgaaGACGgcgGGCGuCUCg -3'
miRNA:   3'- cGACGAGGuuGUAG---UUGCa--CUGC-GAG- -5'
25568 5' -51.2 NC_005337.1 + 69894 0.66 0.985696
Target:  5'- cGCcGCUCCGACA---ACGUGcuccugcgcGCGCUg -3'
miRNA:   3'- -CGaCGAGGUUGUaguUGCAC---------UGCGAg -5'
25568 5' -51.2 NC_005337.1 + 35221 0.66 0.988913
Target:  5'- aCUGCgaCGGCGUgAGCGUGACGgaUUCg -3'
miRNA:   3'- cGACGagGUUGUAgUUGCACUGC--GAG- -5'
25568 5' -51.2 NC_005337.1 + 96829 0.72 0.802921
Target:  5'- cCUGCgggugCgCAGCcgCGGCGUGGCGUUCc -3'
miRNA:   3'- cGACGa----G-GUUGuaGUUGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 88309 0.68 0.949928
Target:  5'- --aGCUCgggGACGUCAGCGUGgACGC-Ca -3'
miRNA:   3'- cgaCGAGg--UUGUAGUUGCAC-UGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 119369 0.71 0.878881
Target:  5'- aGCUGCuUCCAcCAUCGGCGccGCGC-Ca -3'
miRNA:   3'- -CGACG-AGGUuGUAGUUGCacUGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 14653 0.7 0.889069
Target:  5'- gGCgucCUCCGGCAUCAGCGcggcgagacaggaguUGcaGCGCUCg -3'
miRNA:   3'- -CGac-GAGGUUGUAGUUGC---------------AC--UGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 133659 0.68 0.95816
Target:  5'- cGCUGgacgCCGACGcggaguUCGccuGCGUGGCGUUCg -3'
miRNA:   3'- -CGACga--GGUUGU------AGU---UGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 23920 0.68 0.95816
Target:  5'- gGCUGCcgcccUCCGACuUCGA---GACGCUCg -3'
miRNA:   3'- -CGACG-----AGGUUGuAGUUgcaCUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 105326 0.68 0.95816
Target:  5'- aGUUGC-CCAGCAcgugCGGCGgcggGAgGCUCc -3'
miRNA:   3'- -CGACGaGGUUGUa---GUUGCa---CUgCGAG- -5'
25568 5' -51.2 NC_005337.1 + 43622 0.68 0.954169
Target:  5'- aGCcGCUCCGAgAUCAGCGccgccGCGCg- -3'
miRNA:   3'- -CGaCGAGGUUgUAGUUGCac---UGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.