miRNA display CGI


Results 61 - 80 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 5' -51.2 NC_005337.1 + 74544 0.66 0.979591
Target:  5'- cGC-GCUCCGccGCG-CGgcGCGUGAUGCUg -3'
miRNA:   3'- -CGaCGAGGU--UGUaGU--UGCACUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 133168 0.66 0.979591
Target:  5'- gGCUGCUcCCGGCggCGGCGcuGCGC-Cg -3'
miRNA:   3'- -CGACGA-GGUUGuaGUUGCacUGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 104116 0.66 0.979591
Target:  5'- cGCUaCUCCGACAUCuaccccgcgcGCGUGgaGCGCg- -3'
miRNA:   3'- -CGAcGAGGUUGUAGu---------UGCAC--UGCGag -5'
25568 5' -51.2 NC_005337.1 + 97088 0.68 0.945433
Target:  5'- uGCgUGC-CCAACcgCAugcuggugccGCaGUGGCGCUCg -3'
miRNA:   3'- -CG-ACGaGGUUGuaGU----------UG-CACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 69763 0.68 0.945433
Target:  5'- uGCaUGCUCUcgGGCuUCAcCGUGACGCg- -3'
miRNA:   3'- -CG-ACGAGG--UUGuAGUuGCACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 73296 0.68 0.945433
Target:  5'- cGC-GCUCCccu-UCGACGUGAagaaGCUCu -3'
miRNA:   3'- -CGaCGAGGuuguAGUUGCACUg---CGAG- -5'
25568 5' -51.2 NC_005337.1 + 88309 0.68 0.949928
Target:  5'- --aGCUCgggGACGUCAGCGUGgACGC-Ca -3'
miRNA:   3'- cgaCGAGg--UUGUAGUUGCAC-UGCGaG- -5'
25568 5' -51.2 NC_005337.1 + 43622 0.68 0.954169
Target:  5'- aGCcGCUCCGAgAUCAGCGccgccGCGCg- -3'
miRNA:   3'- -CGaCGAGGUUgUAGUUGCac---UGCGag -5'
25568 5' -51.2 NC_005337.1 + 105326 0.68 0.95816
Target:  5'- aGUUGC-CCAGCAcgugCGGCGgcggGAgGCUCc -3'
miRNA:   3'- -CGACGaGGUUGUa---GUUGCa---CUgCGAG- -5'
25568 5' -51.2 NC_005337.1 + 66286 0.66 0.981809
Target:  5'- -gUGgaCCAGacCAcCAACGUGACGUUCc -3'
miRNA:   3'- cgACgaGGUU--GUaGUUGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 89150 0.66 0.981809
Target:  5'- aGCUGC-CCGACGUCuGgGUGcucCGCgUCg -3'
miRNA:   3'- -CGACGaGGUUGUAGuUgCACu--GCG-AG- -5'
25568 5' -51.2 NC_005337.1 + 35221 0.66 0.988913
Target:  5'- aCUGCgaCGGCGUgAGCGUGACGgaUUCg -3'
miRNA:   3'- cGACGagGUUGUAgUUGCACUGC--GAG- -5'
25568 5' -51.2 NC_005337.1 + 34625 0.66 0.988913
Target:  5'- cCUGCUCCu-CGUUgaaGACGgcgGGCGuCUCg -3'
miRNA:   3'- cGACGAGGuuGUAG---UUGCa--CUGC-GAG- -5'
25568 5' -51.2 NC_005337.1 + 89812 0.66 0.987383
Target:  5'- aGCUGCUUgagagcgaCGACAcgCAGCagGUGGCGCg- -3'
miRNA:   3'- -CGACGAG--------GUUGUa-GUUG--CACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 115233 0.66 0.986894
Target:  5'- --aGCUCCAACGUCugcuucGCGUuccgacuccugcgcGACGCg- -3'
miRNA:   3'- cgaCGAGGUUGUAGu-----UGCA--------------CUGCGag -5'
25568 5' -51.2 NC_005337.1 + 69894 0.66 0.985696
Target:  5'- cGCcGCUCCGACA---ACGUGcuccugcgcGCGCUg -3'
miRNA:   3'- -CGaCGAGGUUGUaguUGCAC---------UGCGAg -5'
25568 5' -51.2 NC_005337.1 + 1959 0.66 0.983841
Target:  5'- cGCUGC-CC-GCGUCAGCGagcagccgGACgaGCUCc -3'
miRNA:   3'- -CGACGaGGuUGUAGUUGCa-------CUG--CGAG- -5'
25568 5' -51.2 NC_005337.1 + 73960 0.66 0.983841
Target:  5'- -gUGC-CCug---CAACGUGACGUUCa -3'
miRNA:   3'- cgACGaGGuuguaGUUGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 123588 0.66 0.983646
Target:  5'- cGCUGCUgCGagcugcgGCcgC-ACGUGccGCGCUCg -3'
miRNA:   3'- -CGACGAgGU-------UGuaGuUGCAC--UGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 94314 0.66 0.982644
Target:  5'- --gGCcgaCCAGCAggaUCGagcccacgaugaagcACGUGACGCUCa -3'
miRNA:   3'- cgaCGa--GGUUGU---AGU---------------UGCACUGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.