miRNA display CGI


Results 81 - 100 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25568 5' -51.2 NC_005337.1 + 74544 0.66 0.979591
Target:  5'- cGC-GCUCCGccGCG-CGgcGCGUGAUGCUg -3'
miRNA:   3'- -CGaCGAGGU--UGUaGU--UGCACUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 66286 0.66 0.981809
Target:  5'- -gUGgaCCAGacCAcCAACGUGACGUUCc -3'
miRNA:   3'- cgACgaGGUU--GUaGUUGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 89150 0.66 0.981809
Target:  5'- aGCUGC-CCGACGUCuGgGUGcucCGCgUCg -3'
miRNA:   3'- -CGACGaGGUUGUAGuUgCACu--GCG-AG- -5'
25568 5' -51.2 NC_005337.1 + 94314 0.66 0.982644
Target:  5'- --gGCcgaCCAGCAggaUCGagcccacgaugaagcACGUGACGCUCa -3'
miRNA:   3'- cgaCGa--GGUUGU---AGU---------------UGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 123588 0.66 0.983646
Target:  5'- cGCUGCUgCGagcugcgGCcgC-ACGUGccGCGCUCg -3'
miRNA:   3'- -CGACGAgGU-------UGuaGuUGCAC--UGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 73960 0.66 0.983841
Target:  5'- -gUGC-CCug---CAACGUGACGUUCa -3'
miRNA:   3'- cgACGaGGuuguaGUUGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 1959 0.66 0.983841
Target:  5'- cGCUGC-CC-GCGUCAGCGagcagccgGACgaGCUCc -3'
miRNA:   3'- -CGACGaGGuUGUAGUUGCa-------CUG--CGAG- -5'
25568 5' -51.2 NC_005337.1 + 68287 0.66 0.985696
Target:  5'- uCUGCggCCGGCcggCGGCGUGgACGCg- -3'
miRNA:   3'- cGACGa-GGUUGua-GUUGCAC-UGCGag -5'
25568 5' -51.2 NC_005337.1 + 104116 0.66 0.979591
Target:  5'- cGCUaCUCCGACAUCuaccccgcgcGCGUGgaGCGCg- -3'
miRNA:   3'- -CGAcGAGGUUGUAGu---------UGCAC--UGCGag -5'
25568 5' -51.2 NC_005337.1 + 69166 0.66 0.979591
Target:  5'- uGCUGCUgCAgcACAUCGccaagcACGUGAgcgUGCUg -3'
miRNA:   3'- -CGACGAgGU--UGUAGU------UGCACU---GCGAg -5'
25568 5' -51.2 NC_005337.1 + 32377 0.67 0.978168
Target:  5'- cGgUGCUUCAGCAUgGaguggugcaggaacuGCGUGAaguccaCGCUCg -3'
miRNA:   3'- -CgACGAGGUUGUAgU---------------UGCACU------GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 133659 0.68 0.95816
Target:  5'- cGCUGgacgCCGACGcggaguUCGccuGCGUGGCGUUCg -3'
miRNA:   3'- -CGACga--GGUUGU------AGU---UGCACUGCGAG- -5'
25568 5' -51.2 NC_005337.1 + 24542 0.67 0.968688
Target:  5'- uGCUGCgcaccgCCGACugcUCGGCGUuccGGCGCcaUCg -3'
miRNA:   3'- -CGACGa-----GGUUGu--AGUUGCA---CUGCG--AG- -5'
25568 5' -51.2 NC_005337.1 + 46713 0.67 0.968688
Target:  5'- aGCgaggagGuCUCCGugaACGUCGAUGUGGCGgaCg -3'
miRNA:   3'- -CGa-----C-GAGGU---UGUAGUUGCACUGCgaG- -5'
25568 5' -51.2 NC_005337.1 + 55785 0.67 0.968688
Target:  5'- cCUGUUCCGGgAgcgCGACcUGACGCUg -3'
miRNA:   3'- cGACGAGGUUgUa--GUUGcACUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 2817 0.67 0.971735
Target:  5'- cGCUGCUgCAggACGUC-ACGguaGAUGCUg -3'
miRNA:   3'- -CGACGAgGU--UGUAGuUGCa--CUGCGAg -5'
25568 5' -51.2 NC_005337.1 + 125523 0.67 0.973737
Target:  5'- gGCUGCUcgugcgguacggcgCCGACAUCcgcgccaaggacGACGUGGgGCg- -3'
miRNA:   3'- -CGACGA--------------GGUUGUAG------------UUGCACUgCGag -5'
25568 5' -51.2 NC_005337.1 + 16638 0.67 0.974563
Target:  5'- aGC-GCUCCAcCA-CGGCGgUGACGCg- -3'
miRNA:   3'- -CGaCGAGGUuGUaGUUGC-ACUGCGag -5'
25568 5' -51.2 NC_005337.1 + 72418 0.67 0.974563
Target:  5'- cCUGCUCaacgAGCA-CGGCGUGAgcgUGCUCc -3'
miRNA:   3'- cGACGAGg---UUGUaGUUGCACU---GCGAG- -5'
25568 5' -51.2 NC_005337.1 + 56090 0.67 0.977179
Target:  5'- cCUGgccaUCUAcgGCuUCGGCGUGACGUUCa -3'
miRNA:   3'- cGACg---AGGU--UGuAGUUGCACUGCGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.