miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25570 3' -55.4 NC_005337.1 + 105254 0.66 0.927096
Target:  5'- --gACGAGGcCCGCCUcgUCGAgGcgCUCg -3'
miRNA:   3'- uagUGCUCCaGGUGGA--AGCUgCa-GGG- -5'
25570 3' -55.4 NC_005337.1 + 90839 0.66 0.927096
Target:  5'- -cCGCGGGGUgCCGC--UCGcCGUCCg -3'
miRNA:   3'- uaGUGCUCCA-GGUGgaAGCuGCAGGg -5'
25570 3' -55.4 NC_005337.1 + 115708 0.66 0.927096
Target:  5'- cGUCAacaAGGUCguggaccaCAUCUUCGACGUCgCa -3'
miRNA:   3'- -UAGUgc-UCCAG--------GUGGAAGCUGCAGgG- -5'
25570 3' -55.4 NC_005337.1 + 62614 0.66 0.921642
Target:  5'- cGUCGCGucGUCCGCg-UCGGgGUUCUg -3'
miRNA:   3'- -UAGUGCucCAGGUGgaAGCUgCAGGG- -5'
25570 3' -55.4 NC_005337.1 + 46698 0.66 0.921642
Target:  5'- -cCGgGAGGUCgGCgaCUUCGACaUCCUg -3'
miRNA:   3'- uaGUgCUCCAGgUG--GAAGCUGcAGGG- -5'
25570 3' -55.4 NC_005337.1 + 75004 0.66 0.921642
Target:  5'- -aCACGAGGcggCCGCCgcUGACGcgCaCCg -3'
miRNA:   3'- uaGUGCUCCa--GGUGGaaGCUGCa-G-GG- -5'
25570 3' -55.4 NC_005337.1 + 101199 0.66 0.919959
Target:  5'- gAUCACGGGcaccgCCugCUUCGcggaggucgcggagGCGUCCg -3'
miRNA:   3'- -UAGUGCUCca---GGugGAAGC--------------UGCAGGg -5'
25570 3' -55.4 NC_005337.1 + 4533 0.66 0.915947
Target:  5'- gGUCAUGGGGUCgcaGCCcagUCGGaugaGcUCCCg -3'
miRNA:   3'- -UAGUGCUCCAGg--UGGa--AGCUg---C-AGGG- -5'
25570 3' -55.4 NC_005337.1 + 81466 0.66 0.915947
Target:  5'- aGUCGCGcagcAGGUCCGCCguggUgGGC-UCCg -3'
miRNA:   3'- -UAGUGC----UCCAGGUGGa---AgCUGcAGGg -5'
25570 3' -55.4 NC_005337.1 + 34590 0.66 0.915947
Target:  5'- gGUCGCcGGGUCCACC----ACG-CCCa -3'
miRNA:   3'- -UAGUGcUCCAGGUGGaagcUGCaGGG- -5'
25570 3' -55.4 NC_005337.1 + 87460 0.66 0.915947
Target:  5'- -gCugGAGauggCCagcgcGCCcUCGGCGUCCCa -3'
miRNA:   3'- uaGugCUCca--GG-----UGGaAGCUGCAGGG- -5'
25570 3' -55.4 NC_005337.1 + 10570 0.66 0.915947
Target:  5'- -gCACGGGcGUgcccagCCGCCgcaCGGCGUCCg -3'
miRNA:   3'- uaGUGCUC-CA------GGUGGaa-GCUGCAGGg -5'
25570 3' -55.4 NC_005337.1 + 128393 0.66 0.910013
Target:  5'- -cCGCGuGGUCCGCCU-----GUCCCc -3'
miRNA:   3'- uaGUGCuCCAGGUGGAagcugCAGGG- -5'
25570 3' -55.4 NC_005337.1 + 45958 0.66 0.910013
Target:  5'- -gCGCGuGGcGUCCACgCU--GACGUCCCc -3'
miRNA:   3'- uaGUGC-UC-CAGGUG-GAagCUGCAGGG- -5'
25570 3' -55.4 NC_005337.1 + 112138 0.66 0.908186
Target:  5'- -cCugGcGGUCguuguccgcguacuCGCCgcCGACGUCCCg -3'
miRNA:   3'- uaGugCuCCAG--------------GUGGaaGCUGCAGGG- -5'
25570 3' -55.4 NC_005337.1 + 51884 0.66 0.90384
Target:  5'- cGUCGCGGGGcUCCcgacgacgagGCCcUCGGCG-CCg -3'
miRNA:   3'- -UAGUGCUCC-AGG----------UGGaAGCUGCaGGg -5'
25570 3' -55.4 NC_005337.1 + 46833 0.66 0.90384
Target:  5'- --gGCGAGGUgagCCGCgUguUCaACGUCCCg -3'
miRNA:   3'- uagUGCUCCA---GGUGgA--AGcUGCAGGG- -5'
25570 3' -55.4 NC_005337.1 + 114708 0.66 0.897432
Target:  5'- cUCGCGcGGcucaCCGCCguuuaCGACGUCCg -3'
miRNA:   3'- uAGUGCuCCa---GGUGGaa---GCUGCAGGg -5'
25570 3' -55.4 NC_005337.1 + 117358 0.66 0.897432
Target:  5'- cUCgACGAgcccgugcuGGUCCAgaagauCCUggaccUCGGCGUCCCc -3'
miRNA:   3'- uAG-UGCU---------CCAGGU------GGA-----AGCUGCAGGG- -5'
25570 3' -55.4 NC_005337.1 + 51245 0.66 0.897432
Target:  5'- cUgACGGuGUCCGCCguguaCGGCGUCaCCg -3'
miRNA:   3'- uAgUGCUcCAGGUGGaa---GCUGCAG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.