miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 3' -56.8 NC_005337.1 + 50852 0.66 0.868339
Target:  5'- --cGGCaCCgaGAuGCU-CGUGGGCGCCa -3'
miRNA:   3'- uguUCG-GGgaCU-UGAgGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 71160 0.66 0.868339
Target:  5'- cCGAGCCCU---GCaUCGUGGgGCGCCc -3'
miRNA:   3'- uGUUCGGGGacuUGaGGCACC-UGCGG- -5'
25573 3' -56.8 NC_005337.1 + 35587 0.66 0.845115
Target:  5'- aGCGAGgcggauCCCCgccgGAGCaCCGUGGcucCGCCc -3'
miRNA:   3'- -UGUUC------GGGGa---CUUGaGGCACCu--GCGG- -5'
25573 3' -56.8 NC_005337.1 + 6705 0.66 0.845115
Target:  5'- cCAGGCCCUUcucgagcagGAACgagaCCacgGGGCGCCg -3'
miRNA:   3'- uGUUCGGGGA---------CUUGa---GGca-CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 107187 0.66 0.853059
Target:  5'- ---uGCCgCUGGACUUCGUGGucaccuucaACgGCCa -3'
miRNA:   3'- uguuCGGgGACUUGAGGCACC---------UG-CGG- -5'
25573 3' -56.8 NC_005337.1 + 64774 0.66 0.841883
Target:  5'- gGCGAggcGUUCCUGGACUUCGaguucgccgacggGGACGUCg -3'
miRNA:   3'- -UGUU---CGGGGACUUGAGGCa------------CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 3245 0.66 0.868339
Target:  5'- aGCGcGGCaCCgUGuACUCUGUGGAgGCg -3'
miRNA:   3'- -UGU-UCG-GGgACuUGAGGCACCUgCGg -5'
25573 3' -56.8 NC_005337.1 + 30535 0.66 0.836978
Target:  5'- gGCAgccacGGCCUCUucguagacGGACUcggggagcuccCCGUGGAgGCCg -3'
miRNA:   3'- -UGU-----UCGGGGA--------CUUGA-----------GGCACCUgCGG- -5'
25573 3' -56.8 NC_005337.1 + 41174 0.66 0.853059
Target:  5'- gGCAGGUCCUUGAug-CCGcGGAggaGCCc -3'
miRNA:   3'- -UGUUCGGGGACUugaGGCaCCUg--CGG- -5'
25573 3' -56.8 NC_005337.1 + 11013 0.67 0.784512
Target:  5'- cCAuGUCCgaGGGCUCCGUGaugaacauGugGCCg -3'
miRNA:   3'- uGUuCGGGgaCUUGAGGCAC--------CugCGG- -5'
25573 3' -56.8 NC_005337.1 + 29648 0.67 0.819292
Target:  5'- cACGGGCUCCgaGAugcgcguGCUCCcgcgGUGG-CGCCg -3'
miRNA:   3'- -UGUUCGGGGa-CU-------UGAGG----CACCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 69237 0.67 0.820151
Target:  5'- cGCGcGCgCCUGGACgugCCG-GuGACGCUg -3'
miRNA:   3'- -UGUuCGgGGACUUGa--GGCaC-CUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 6545 0.67 0.784512
Target:  5'- cACGAaCUCCUucAGCagCGUGGACGCCa -3'
miRNA:   3'- -UGUUcGGGGAc-UUGagGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 36459 0.67 0.828654
Target:  5'- --cAGCCCCgugcccgagaaGAACaCCGUGGACaCCa -3'
miRNA:   3'- uguUCGGGGa----------CUUGaGGCACCUGcGG- -5'
25573 3' -56.8 NC_005337.1 + 123665 0.67 0.823574
Target:  5'- cGCGGGCCUguaccaccuccgcaUGGugUCCacGGACGCCg -3'
miRNA:   3'- -UGUUCGGGg-------------ACUugAGGcaCCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 81474 0.67 0.820151
Target:  5'- aGCAGGUCCgCcguggUGGGCUCCGUGuucACGCg -3'
miRNA:   3'- -UGUUCGGG-G-----ACUUGAGGCACc--UGCGg -5'
25573 3' -56.8 NC_005337.1 + 43094 0.67 0.828654
Target:  5'- cGCGGcGCCCgggaUGAAgUUCGUGGAcaucucCGCCa -3'
miRNA:   3'- -UGUU-CGGGg---ACUUgAGGCACCU------GCGG- -5'
25573 3' -56.8 NC_005337.1 + 119453 0.67 0.784512
Target:  5'- uCGAGCCcuaCCUGGucACcgUCCaGUGGACGCa -3'
miRNA:   3'- uGUUCGG---GGACU--UG--AGG-CACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 4662 0.67 0.802641
Target:  5'- cACGAGCCgCCggacGAGCUCCacGGuCGCUc -3'
miRNA:   3'- -UGUUCGG-GGa---CUUGAGGcaCCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 93263 0.67 0.784512
Target:  5'- gGCGGGCCUCaagcgGGACaUCC-UGGcCGCCg -3'
miRNA:   3'- -UGUUCGGGGa----CUUG-AGGcACCuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.