miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 3' -56.8 NC_005337.1 + 11013 0.67 0.784512
Target:  5'- cCAuGUCCgaGGGCUCCGUGaugaacauGugGCCg -3'
miRNA:   3'- uGUuCGGGgaCUUGAGGCAC--------CugCGG- -5'
25573 3' -56.8 NC_005337.1 + 119453 0.67 0.784512
Target:  5'- uCGAGCCcuaCCUGGucACcgUCCaGUGGACGCa -3'
miRNA:   3'- uGUUCGG---GGACU--UG--AGG-CACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 81474 0.67 0.820151
Target:  5'- aGCAGGUCCgCcguggUGGGCUCCGUGuucACGCg -3'
miRNA:   3'- -UGUUCGGG-G-----ACUUGAGGCACc--UGCGg -5'
25573 3' -56.8 NC_005337.1 + 49705 0.67 0.812352
Target:  5'- cCAGcGCCCC-GGGCUCgGcgcgccgguugagcgGGACGCCg -3'
miRNA:   3'- uGUU-CGGGGaCUUGAGgCa--------------CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 60389 0.67 0.802641
Target:  5'- cCAGGCagaCCUcGAugUCCGUGGccaugaGCCc -3'
miRNA:   3'- uGUUCGg--GGA-CUugAGGCACCug----CGG- -5'
25573 3' -56.8 NC_005337.1 + 72185 0.67 0.802641
Target:  5'- aGCAAGUaCgaGAACUCCGUGuucGugGUCg -3'
miRNA:   3'- -UGUUCGgGgaCUUGAGGCAC---CugCGG- -5'
25573 3' -56.8 NC_005337.1 + 101509 0.67 0.811478
Target:  5'- cGCGAGCgCUccgcgcggCUGGAggCCGUGGACGUg -3'
miRNA:   3'- -UGUUCG-GG--------GACUUgaGGCACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 46129 0.67 0.79365
Target:  5'- aGCAGGUCCgC-GAGCUCCG---ACGCCa -3'
miRNA:   3'- -UGUUCGGG-GaCUUGAGGCaccUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 51632 0.67 0.79365
Target:  5'- gACGAGCUgCggucgGcGCUCCGcGGuCGCCa -3'
miRNA:   3'- -UGUUCGGgGa----CuUGAGGCaCCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 22910 0.67 0.811478
Target:  5'- cGCGAGCUCUUcagcgacagcGucCUCCGcuacuuccUGGACGCCa -3'
miRNA:   3'- -UGUUCGGGGA----------CuuGAGGC--------ACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 95609 0.68 0.746683
Target:  5'- aGCAGcGCgCCaUGGcgGCgUCCGUGGGCGCg -3'
miRNA:   3'- -UGUU-CGgGG-ACU--UG-AGGCACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 93117 0.68 0.746683
Target:  5'- gACcuGCCCCUGGAgaCgGUcccGGACGCg -3'
miRNA:   3'- -UGuuCGGGGACUUgaGgCA---CCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 31728 0.68 0.756314
Target:  5'- uACAGGCCCUUGAGCUggUUG-GGGCuGUCc -3'
miRNA:   3'- -UGUUCGGGGACUUGA--GGCaCCUG-CGG- -5'
25573 3' -56.8 NC_005337.1 + 18708 0.68 0.746683
Target:  5'- uCGGGCCCCggcgagGAGCUgCGgcgcgcuGGCGCCu -3'
miRNA:   3'- uGUUCGGGGa-----CUUGAgGCac-----CUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 128732 0.68 0.769611
Target:  5'- cGCGAGCCgCUcuggagcgcgugacaGAGCUCCGccGGCGCg -3'
miRNA:   3'- -UGUUCGGgGA---------------CUUGAGGCacCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 48159 0.68 0.736951
Target:  5'- gACGAGCCCCgcgagugcugGGACccggagugcgucUCCGgGGACGUg -3'
miRNA:   3'- -UGUUCGGGGa---------CUUG------------AGGCaCCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 35757 0.68 0.776171
Target:  5'- gGCGGGCuCCCcccggccuugccgcgGAACUCgG-GGACGUCg -3'
miRNA:   3'- -UGUUCG-GGGa--------------CUUGAGgCaCCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 129194 0.68 0.775238
Target:  5'- -gAGGCCggUGc-CUUCGUGGACGCCc -3'
miRNA:   3'- ugUUCGGggACuuGAGGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 130753 0.68 0.765836
Target:  5'- uACGuGGCCUCgcaggUGGACUUCGcgcagaccUGGGCGCCg -3'
miRNA:   3'- -UGU-UCGGGG-----ACUUGAGGC--------ACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 45231 0.68 0.765836
Target:  5'- gACGcGGCCUUcGAGCUCguCG-GGACGCCg -3'
miRNA:   3'- -UGU-UCGGGGaCUUGAG--GCaCCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.