miRNA display CGI


Results 81 - 100 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 3' -56.8 NC_005337.1 + 1984 0.7 0.666787
Target:  5'- gACGAGCUCC--AGCUCgCGUcGGACGaCCg -3'
miRNA:   3'- -UGUUCGGGGacUUGAG-GCA-CCUGC-GG- -5'
25573 3' -56.8 NC_005337.1 + 103185 0.7 0.625876
Target:  5'- cGCucguGGCCUcgCUGAACcccgcgaUCGUGGACGCCu -3'
miRNA:   3'- -UGu---UCGGG--GACUUGa------GGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 105214 0.7 0.636117
Target:  5'- -gGGGCCgCUGAGCUgCGcgcucgcGGGCGCCc -3'
miRNA:   3'- ugUUCGGgGACUUGAgGCa------CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 94089 0.7 0.636117
Target:  5'- cCGGGCaCCCgagGGGCg--GUGGACGCCu -3'
miRNA:   3'- uGUUCG-GGGa--CUUGaggCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 130708 0.7 0.636117
Target:  5'- gACGGGCCC--GGACUCCGUGu-CGCUc -3'
miRNA:   3'- -UGUUCGGGgaCUUGAGGCACcuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 47241 0.7 0.61564
Target:  5'- cGCAAGCCCgUGAucguGCagUCGcUGGACGCg -3'
miRNA:   3'- -UGUUCGGGgACU----UGa-GGC-ACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 114665 0.7 0.611549
Target:  5'- cGCGGGCCUCgaggccgccuCUCCGcUGGACGCa -3'
miRNA:   3'- -UGUUCGGGGacuu------GAGGC-ACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 111858 0.7 0.61564
Target:  5'- aGCAGGCCCCgGAugUCgGUGu-CGUCc -3'
miRNA:   3'- -UGUUCGGGGaCUugAGgCACcuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 115038 0.7 0.61564
Target:  5'- cCAAGCUCaucaGACUCgcggaCGUGGACGCCg -3'
miRNA:   3'- uGUUCGGGgac-UUGAG-----GCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 103482 0.7 0.625876
Target:  5'- -gAGGCCgaCCU---CUUCGUGGACGCCg -3'
miRNA:   3'- ugUUCGG--GGAcuuGAGGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 29340 0.71 0.574894
Target:  5'- aGCAGGCCCa-GGAUcuggUCCGUGG-UGCCc -3'
miRNA:   3'- -UGUUCGGGgaCUUG----AGGCACCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 33600 0.71 0.595213
Target:  5'- uCGAGCCC--GAGCaCCGUcgcGGACGCCg -3'
miRNA:   3'- uGUUCGGGgaCUUGaGGCA---CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 29577 0.71 0.564793
Target:  5'- cACAgcAGCUCCUcggcGGugUCCGacgcGGACGCCa -3'
miRNA:   3'- -UGU--UCGGGGA----CUugAGGCa---CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 94719 0.71 0.585037
Target:  5'- gACGAGUaCCC-GAGCgcccgCCG-GGGCGCCg -3'
miRNA:   3'- -UGUUCG-GGGaCUUGa----GGCaCCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 43516 0.71 0.595213
Target:  5'- gACGAGUUCCgcAGCUCCGUGGaggaGCGCa -3'
miRNA:   3'- -UGUUCGGGGacUUGAGGCACC----UGCGg -5'
25573 3' -56.8 NC_005337.1 + 95648 0.71 0.564793
Target:  5'- cACGGGCUCCagGGGCUCCG-GGuuccccagcACGCCc -3'
miRNA:   3'- -UGUUCGGGGa-CUUGAGGCaCC---------UGCGG- -5'
25573 3' -56.8 NC_005337.1 + 39559 0.71 0.585037
Target:  5'- gGCGGGCgCUCgGGuACUCguccuCGUGGACGCCg -3'
miRNA:   3'- -UGUUCG-GGGaCU-UGAG-----GCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 53261 0.71 0.585037
Target:  5'- --cGGCCCgUGGA---CGUGGACGCCa -3'
miRNA:   3'- uguUCGGGgACUUgagGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 37801 0.72 0.505378
Target:  5'- cCAGGCCCCgccgGAAa--CGUGG-CGCCa -3'
miRNA:   3'- uGUUCGGGGa---CUUgagGCACCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 88085 0.72 0.505378
Target:  5'- uGCAGG-CCgUGGACaUgGUGGACGCCg -3'
miRNA:   3'- -UGUUCgGGgACUUGaGgCACCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.