miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 3' -56.8 NC_005337.1 + 103185 0.7 0.625876
Target:  5'- cGCucguGGCCUcgCUGAACcccgcgaUCGUGGACGCCu -3'
miRNA:   3'- -UGu---UCGGG--GACUUGa------GGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 130944 0.69 0.717223
Target:  5'- --cAGCCguuCCUGGACgccggcguggCCGUGGACGUg -3'
miRNA:   3'- uguUCGG---GGACUUGa---------GGCACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 38550 0.69 0.672898
Target:  5'- aACGcGCUCCggaucuucucaucGGACUCCGUGcACGCCa -3'
miRNA:   3'- -UGUuCGGGGa------------CUUGAGGCACcUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 12528 0.69 0.697204
Target:  5'- -gAGGUUCCUgcGAGCUCCGUGaACGCg -3'
miRNA:   3'- ugUUCGGGGA--CUUGAGGCACcUGCGg -5'
25573 3' -56.8 NC_005337.1 + 31748 0.69 0.707245
Target:  5'- cGCAGGaagaUGGACUCCGUGG-CGUCg -3'
miRNA:   3'- -UGUUCggggACUUGAGGCACCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 102314 0.69 0.687108
Target:  5'- cCAuGCgCCUgGGGCUCCGcgUGGAgGCCa -3'
miRNA:   3'- uGUuCGgGGA-CUUGAGGC--ACCUgCGG- -5'
25573 3' -56.8 NC_005337.1 + 131366 0.69 0.717223
Target:  5'- gGCGAcgccGCUCCUGGACguggUCUGcagccGGACGCCg -3'
miRNA:   3'- -UGUU----CGGGGACUUG----AGGCa----CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 19473 0.69 0.676966
Target:  5'- -aGAGCCgCUGAuacaucauGC-CCGUGGGCGUg -3'
miRNA:   3'- ugUUCGGgGACU--------UGaGGCACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 82239 0.69 0.687108
Target:  5'- cGCAGGUCCCgGAACUCCaUGaccGCGCg -3'
miRNA:   3'- -UGUUCGGGGaCUUGAGGcACc--UGCGg -5'
25573 3' -56.8 NC_005337.1 + 59419 0.69 0.717223
Target:  5'- aGCAGGCCCUUGAcCUcgCCGUucgGGACGa- -3'
miRNA:   3'- -UGUUCGGGGACUuGA--GGCA---CCUGCgg -5'
25573 3' -56.8 NC_005337.1 + 129603 0.69 0.727129
Target:  5'- cGCGAGCgaCCgugGAGCUCguccggcggcuCGUGGcCGCCg -3'
miRNA:   3'- -UGUUCGg-GGa--CUUGAG-----------GCACCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 123538 0.69 0.726142
Target:  5'- uCGAGUgcacgucccaccgCCCUGAccACauggCCGUGGACGCg -3'
miRNA:   3'- uGUUCG-------------GGGACU--UGa---GGCACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 95609 0.68 0.746683
Target:  5'- aGCAGcGCgCCaUGGcgGCgUCCGUGGGCGCg -3'
miRNA:   3'- -UGUU-CGgGG-ACU--UG-AGGCACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 130753 0.68 0.765836
Target:  5'- uACGuGGCCUCgcaggUGGACUUCGcgcagaccUGGGCGCCg -3'
miRNA:   3'- -UGU-UCGGGG-----ACUUGAGGC--------ACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 45231 0.68 0.765836
Target:  5'- gACGcGGCCUUcGAGCUCguCG-GGACGCCg -3'
miRNA:   3'- -UGU-UCGGGGaCUUGAG--GCaCCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 128732 0.68 0.769611
Target:  5'- cGCGAGCCgCUcuggagcgcgugacaGAGCUCCGccGGCGCg -3'
miRNA:   3'- -UGUUCGGgGA---------------CUUGAGGCacCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 129194 0.68 0.775238
Target:  5'- -gAGGCCggUGc-CUUCGUGGACGCCc -3'
miRNA:   3'- ugUUCGGggACuuGAGGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 35757 0.68 0.776171
Target:  5'- gGCGGGCuCCCcccggccuugccgcgGAACUCgG-GGACGUCg -3'
miRNA:   3'- -UGUUCG-GGGa--------------CUUGAGgCaCCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 48159 0.68 0.736951
Target:  5'- gACGAGCCCCgcgagugcugGGACccggagugcgucUCCGgGGACGUg -3'
miRNA:   3'- -UGUUCGGGGa---------CUUG------------AGGCaCCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 96556 0.68 0.746683
Target:  5'- gGCAuucuGCUCCUcgguggugaaGAGCUCgGcguccUGGACGCCg -3'
miRNA:   3'- -UGUu---CGGGGA----------CUUGAGgC-----ACCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.