miRNA display CGI


Results 61 - 80 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 3' -56.8 NC_005337.1 + 31728 0.68 0.756314
Target:  5'- uACAGGCCCUUGAGCUggUUG-GGGCuGUCc -3'
miRNA:   3'- -UGUUCGGGGACUUGA--GGCaCCUG-CGG- -5'
25573 3' -56.8 NC_005337.1 + 131534 0.68 0.756314
Target:  5'- gAUAGGCCCgUGcccGCUaCCGgcGGACGUCg -3'
miRNA:   3'- -UGUUCGGGgACu--UGA-GGCa-CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 114889 0.68 0.765836
Target:  5'- --cGGCCCCau--CUUCGUGGAagcCGCCa -3'
miRNA:   3'- uguUCGGGGacuuGAGGCACCU---GCGG- -5'
25573 3' -56.8 NC_005337.1 + 128732 0.68 0.769611
Target:  5'- cGCGAGCCgCUcuggagcgcgugacaGAGCUCCGccGGCGCg -3'
miRNA:   3'- -UGUUCGGgGA---------------CUUGAGGCacCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 81669 0.68 0.765836
Target:  5'- aGCGAGaCCCC-GAGCUCC-UGGAagUGCg -3'
miRNA:   3'- -UGUUC-GGGGaCUUGAGGcACCU--GCGg -5'
25573 3' -56.8 NC_005337.1 + 45231 0.68 0.765836
Target:  5'- gACGcGGCCUUcGAGCUCguCG-GGACGCCg -3'
miRNA:   3'- -UGU-UCGGGGaCUUGAG--GCaCCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 130753 0.68 0.765836
Target:  5'- uACGuGGCCUCgcaggUGGACUUCGcgcagaccUGGGCGCCg -3'
miRNA:   3'- -UGU-UCGGGG-----ACUUGAGGC--------ACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 93117 0.68 0.746683
Target:  5'- gACcuGCCCCUGGAgaCgGUcccGGACGCg -3'
miRNA:   3'- -UGuuCGGGGACUUgaGgCA---CCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 51632 0.67 0.79365
Target:  5'- gACGAGCUgCggucgGcGCUCCGcGGuCGCCa -3'
miRNA:   3'- -UGUUCGGgGa----CuUGAGGCaCCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 72185 0.67 0.802641
Target:  5'- aGCAAGUaCgaGAACUCCGUGuucGugGUCg -3'
miRNA:   3'- -UGUUCGgGgaCUUGAGGCAC---CugCGG- -5'
25573 3' -56.8 NC_005337.1 + 22910 0.67 0.811478
Target:  5'- cGCGAGCUCUUcagcgacagcGucCUCCGcuacuuccUGGACGCCa -3'
miRNA:   3'- -UGUUCGGGGA----------CuuGAGGC--------ACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 101509 0.67 0.811478
Target:  5'- cGCGAGCgCUccgcgcggCUGGAggCCGUGGACGUg -3'
miRNA:   3'- -UGUUCG-GG--------GACUUgaGGCACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 128245 0.67 0.811478
Target:  5'- cCAcGCCCgCgacAACUCUGggcGGACGCCg -3'
miRNA:   3'- uGUuCGGG-Gac-UUGAGGCa--CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 90955 0.67 0.811478
Target:  5'- gGCGAGCCCC-GAGCaguaCGUG-ACGUCc -3'
miRNA:   3'- -UGUUCGGGGaCUUGag--GCACcUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 49705 0.67 0.812352
Target:  5'- cCAGcGCCCC-GGGCUCgGcgcgccgguugagcgGGACGCCg -3'
miRNA:   3'- uGUU-CGGGGaCUUGAGgCa--------------CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 29648 0.67 0.819292
Target:  5'- cACGGGCUCCgaGAugcgcguGCUCCcgcgGUGG-CGCCg -3'
miRNA:   3'- -UGUUCGGGGa-CU-------UGAGG----CACCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 69237 0.67 0.820151
Target:  5'- cGCGcGCgCCUGGACgugCCG-GuGACGCUg -3'
miRNA:   3'- -UGUuCGgGGACUUGa--GGCaC-CUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 6545 0.67 0.784512
Target:  5'- cACGAaCUCCUucAGCagCGUGGACGCCa -3'
miRNA:   3'- -UGUUcGGGGAc-UUGagGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 46129 0.67 0.79365
Target:  5'- aGCAGGUCCgC-GAGCUCCG---ACGCCa -3'
miRNA:   3'- -UGUUCGGG-GaCUUGAGGCaccUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 103987 0.67 0.784512
Target:  5'- uGCcGGCCguCCUGGcgcucaccuGCgcgCCGUGGACcGCCu -3'
miRNA:   3'- -UGuUCGG--GGACU---------UGa--GGCACCUG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.