Results 21 - 40 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25573 | 3' | -56.8 | NC_005337.1 | + | 52771 | 0.66 | 0.853059 |
Target: 5'- aAUggGCUCCcGcGACgcgUCGUGGuACGCCg -3' miRNA: 3'- -UGuuCGGGGaC-UUGa--GGCACC-UGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 35587 | 0.66 | 0.845115 |
Target: 5'- aGCGAGgcggauCCCCgccgGAGCaCCGUGGcucCGCCc -3' miRNA: 3'- -UGUUC------GGGGa---CUUGaGGCACCu--GCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 14904 | 0.66 | 0.845115 |
Target: 5'- gGCGcGGCgCCgauggugGAagcaGCUCuCGUGGugGCCg -3' miRNA: 3'- -UGU-UCGgGGa------CU----UGAG-GCACCugCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 77661 | 0.66 | 0.845115 |
Target: 5'- cGCgAGGUCUCgcagacGAugUCCGUGGacugcgagcGCGCCa -3' miRNA: 3'- -UG-UUCGGGGa-----CUugAGGCACC---------UGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 6705 | 0.66 | 0.845115 |
Target: 5'- cCAGGCCCUUcucgagcagGAACgagaCCacgGGGCGCCg -3' miRNA: 3'- uGUUCGGGGA---------CUUGa---GGca-CCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 41168 | 0.66 | 0.842694 |
Target: 5'- cGCAGuccuCCCCgaucuccacgucgaUGAGCUCCGUGGagaggucgGCGCUu -3' miRNA: 3'- -UGUUc---GGGG--------------ACUUGAGGCACC--------UGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 64774 | 0.66 | 0.841883 |
Target: 5'- gGCGAggcGUUCCUGGACUUCGaguucgccgacggGGACGUCg -3' miRNA: 3'- -UGUU---CGGGGACUUGAGGCa------------CCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 30535 | 0.66 | 0.836978 |
Target: 5'- gGCAgccacGGCCUCUucguagacGGACUcggggagcuccCCGUGGAgGCCg -3' miRNA: 3'- -UGU-----UCGGGGA--------CUUGA-----------GGCACCUgCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 129403 | 0.66 | 0.836154 |
Target: 5'- -gGAGCCgCUcaUGGACaugcucaUCCGgcUGGGCGCCa -3' miRNA: 3'- ugUUCGG-GG--ACUUG-------AGGC--ACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 36459 | 0.67 | 0.828654 |
Target: 5'- --cAGCCCCgugcccgagaaGAACaCCGUGGACaCCa -3' miRNA: 3'- uguUCGGGGa----------CUUGaGGCACCUGcGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 43094 | 0.67 | 0.828654 |
Target: 5'- cGCGGcGCCCgggaUGAAgUUCGUGGAcaucucCGCCa -3' miRNA: 3'- -UGUU-CGGGg---ACUUgAGGCACCU------GCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 123665 | 0.67 | 0.823574 |
Target: 5'- cGCGGGCCUguaccaccuccgcaUGGugUCCacGGACGCCg -3' miRNA: 3'- -UGUUCGGGg-------------ACUugAGGcaCCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 81474 | 0.67 | 0.820151 |
Target: 5'- aGCAGGUCCgCcguggUGGGCUCCGUGuucACGCg -3' miRNA: 3'- -UGUUCGGG-G-----ACUUGAGGCACc--UGCGg -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 69237 | 0.67 | 0.820151 |
Target: 5'- cGCGcGCgCCUGGACgugCCG-GuGACGCUg -3' miRNA: 3'- -UGUuCGgGGACUUGa--GGCaC-CUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 29648 | 0.67 | 0.819292 |
Target: 5'- cACGGGCUCCgaGAugcgcguGCUCCcgcgGUGG-CGCCg -3' miRNA: 3'- -UGUUCGGGGa-CU-------UGAGG----CACCuGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 49705 | 0.67 | 0.812352 |
Target: 5'- cCAGcGCCCC-GGGCUCgGcgcgccgguugagcgGGACGCCg -3' miRNA: 3'- uGUU-CGGGGaCUUGAGgCa--------------CCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 90955 | 0.67 | 0.811478 |
Target: 5'- gGCGAGCCCC-GAGCaguaCGUG-ACGUCc -3' miRNA: 3'- -UGUUCGGGGaCUUGag--GCACcUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 101509 | 0.67 | 0.811478 |
Target: 5'- cGCGAGCgCUccgcgcggCUGGAggCCGUGGACGUg -3' miRNA: 3'- -UGUUCG-GG--------GACUUgaGGCACCUGCGg -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 22910 | 0.67 | 0.811478 |
Target: 5'- cGCGAGCUCUUcagcgacagcGucCUCCGcuacuuccUGGACGCCa -3' miRNA: 3'- -UGUUCGGGGA----------CuuGAGGC--------ACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 128245 | 0.67 | 0.811478 |
Target: 5'- cCAcGCCCgCgacAACUCUGggcGGACGCCg -3' miRNA: 3'- uGUuCGGG-Gac-UUGAGGCa--CCUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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