miRNA display CGI


Results 41 - 60 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25573 3' -56.8 NC_005337.1 + 60389 0.67 0.802641
Target:  5'- cCAGGCagaCCUcGAugUCCGUGGccaugaGCCc -3'
miRNA:   3'- uGUUCGg--GGA-CUugAGGCACCug----CGG- -5'
25573 3' -56.8 NC_005337.1 + 4662 0.67 0.802641
Target:  5'- cACGAGCCgCCggacGAGCUCCacGGuCGCUc -3'
miRNA:   3'- -UGUUCGG-GGa---CUUGAGGcaCCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 72185 0.67 0.802641
Target:  5'- aGCAAGUaCgaGAACUCCGUGuucGugGUCg -3'
miRNA:   3'- -UGUUCGgGgaCUUGAGGCAC---CugCGG- -5'
25573 3' -56.8 NC_005337.1 + 46129 0.67 0.79365
Target:  5'- aGCAGGUCCgC-GAGCUCCG---ACGCCa -3'
miRNA:   3'- -UGUUCGGG-GaCUUGAGGCaccUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 51632 0.67 0.79365
Target:  5'- gACGAGCUgCggucgGcGCUCCGcGGuCGCCa -3'
miRNA:   3'- -UGUUCGGgGa----CuUGAGGCaCCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 6545 0.67 0.784512
Target:  5'- cACGAaCUCCUucAGCagCGUGGACGCCa -3'
miRNA:   3'- -UGUUcGGGGAc-UUGagGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 119453 0.67 0.784512
Target:  5'- uCGAGCCcuaCCUGGucACcgUCCaGUGGACGCa -3'
miRNA:   3'- uGUUCGG---GGACU--UG--AGG-CACCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 11013 0.67 0.784512
Target:  5'- cCAuGUCCgaGGGCUCCGUGaugaacauGugGCCg -3'
miRNA:   3'- uGUuCGGGgaCUUGAGGCAC--------CugCGG- -5'
25573 3' -56.8 NC_005337.1 + 93263 0.67 0.784512
Target:  5'- gGCGGGCCUCaagcgGGACaUCC-UGGcCGCCg -3'
miRNA:   3'- -UGUUCGGGGa----CUUG-AGGcACCuGCGG- -5'
25573 3' -56.8 NC_005337.1 + 103987 0.67 0.784512
Target:  5'- uGCcGGCCguCCUGGcgcucaccuGCgcgCCGUGGACcGCCu -3'
miRNA:   3'- -UGuUCGG--GGACU---------UGa--GGCACCUG-CGG- -5'
25573 3' -56.8 NC_005337.1 + 35757 0.68 0.776171
Target:  5'- gGCGGGCuCCCcccggccuugccgcgGAACUCgG-GGACGUCg -3'
miRNA:   3'- -UGUUCG-GGGa--------------CUUGAGgCaCCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 129194 0.68 0.775238
Target:  5'- -gAGGCCggUGc-CUUCGUGGACGCCc -3'
miRNA:   3'- ugUUCGGggACuuGAGGCACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 124915 0.68 0.769611
Target:  5'- aGCAugccccuGCCCCUGGACcCCGacagcagucccuccGGACGCa -3'
miRNA:   3'- -UGUu------CGGGGACUUGaGGCa-------------CCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 128732 0.68 0.769611
Target:  5'- cGCGAGCCgCUcuggagcgcgugacaGAGCUCCGccGGCGCg -3'
miRNA:   3'- -UGUUCGGgGA---------------CUUGAGGCacCUGCGg -5'
25573 3' -56.8 NC_005337.1 + 114889 0.68 0.765836
Target:  5'- --cGGCCCCau--CUUCGUGGAagcCGCCa -3'
miRNA:   3'- uguUCGGGGacuuGAGGCACCU---GCGG- -5'
25573 3' -56.8 NC_005337.1 + 81669 0.68 0.765836
Target:  5'- aGCGAGaCCCC-GAGCUCC-UGGAagUGCg -3'
miRNA:   3'- -UGUUC-GGGGaCUUGAGGcACCU--GCGg -5'
25573 3' -56.8 NC_005337.1 + 130753 0.68 0.765836
Target:  5'- uACGuGGCCUCgcaggUGGACUUCGcgcagaccUGGGCGCCg -3'
miRNA:   3'- -UGU-UCGGGG-----ACUUGAGGC--------ACCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 45231 0.68 0.765836
Target:  5'- gACGcGGCCUUcGAGCUCguCG-GGACGCCg -3'
miRNA:   3'- -UGU-UCGGGGaCUUGAG--GCaCCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 131534 0.68 0.756314
Target:  5'- gAUAGGCCCgUGcccGCUaCCGgcGGACGUCg -3'
miRNA:   3'- -UGUUCGGGgACu--UGA-GGCa-CCUGCGG- -5'
25573 3' -56.8 NC_005337.1 + 31728 0.68 0.756314
Target:  5'- uACAGGCCCUUGAGCUggUUG-GGGCuGUCc -3'
miRNA:   3'- -UGUUCGGGGACUUGA--GGCaCCUG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.