Results 81 - 100 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25573 | 3' | -56.8 | NC_005337.1 | + | 131421 | 0.7 | 0.646354 |
Target: 5'- gGCGcgcGGCUCCgcGGACUCCGUcuccgcGGAgGCCg -3' miRNA: 3'- -UGU---UCGGGGa-CUUGAGGCA------CCUgCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 94089 | 0.7 | 0.636117 |
Target: 5'- cCGGGCaCCCgagGGGCg--GUGGACGCCu -3' miRNA: 3'- uGUUCG-GGGa--CUUGaggCACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 130708 | 0.7 | 0.636117 |
Target: 5'- gACGGGCCC--GGACUCCGUGu-CGCUc -3' miRNA: 3'- -UGUUCGGGgaCUUGAGGCACcuGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 105214 | 0.7 | 0.636117 |
Target: 5'- -gGGGCCgCUGAGCUgCGcgcucgcGGGCGCCc -3' miRNA: 3'- ugUUCGGgGACUUGAgGCa------CCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 103185 | 0.7 | 0.625876 |
Target: 5'- cGCucguGGCCUcgCUGAACcccgcgaUCGUGGACGCCu -3' miRNA: 3'- -UGu---UCGGG--GACUUGa------GGCACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 103482 | 0.7 | 0.625876 |
Target: 5'- -gAGGCCgaCCU---CUUCGUGGACGCCg -3' miRNA: 3'- ugUUCGG--GGAcuuGAGGCACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 47241 | 0.7 | 0.61564 |
Target: 5'- cGCAAGCCCgUGAucguGCagUCGcUGGACGCg -3' miRNA: 3'- -UGUUCGGGgACU----UGa-GGC-ACCUGCGg -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 111858 | 0.7 | 0.61564 |
Target: 5'- aGCAGGCCCCgGAugUCgGUGu-CGUCc -3' miRNA: 3'- -UGUUCGGGGaCUugAGgCACcuGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 115038 | 0.7 | 0.61564 |
Target: 5'- cCAAGCUCaucaGACUCgcggaCGUGGACGCCg -3' miRNA: 3'- uGUUCGGGgac-UUGAG-----GCACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 114665 | 0.7 | 0.611549 |
Target: 5'- cGCGGGCCUCgaggccgccuCUCCGcUGGACGCa -3' miRNA: 3'- -UGUUCGGGGacuu------GAGGC-ACCUGCGg -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 33600 | 0.71 | 0.595213 |
Target: 5'- uCGAGCCC--GAGCaCCGUcgcGGACGCCg -3' miRNA: 3'- uGUUCGGGgaCUUGaGGCA---CCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 43516 | 0.71 | 0.595213 |
Target: 5'- gACGAGUUCCgcAGCUCCGUGGaggaGCGCa -3' miRNA: 3'- -UGUUCGGGGacUUGAGGCACC----UGCGg -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 53261 | 0.71 | 0.585037 |
Target: 5'- --cGGCCCgUGGA---CGUGGACGCCa -3' miRNA: 3'- uguUCGGGgACUUgagGCACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 39559 | 0.71 | 0.585037 |
Target: 5'- gGCGGGCgCUCgGGuACUCguccuCGUGGACGCCg -3' miRNA: 3'- -UGUUCG-GGGaCU-UGAG-----GCACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 94719 | 0.71 | 0.585037 |
Target: 5'- gACGAGUaCCC-GAGCgcccgCCG-GGGCGCCg -3' miRNA: 3'- -UGUUCG-GGGaCUUGa----GGCaCCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 29340 | 0.71 | 0.574894 |
Target: 5'- aGCAGGCCCa-GGAUcuggUCCGUGG-UGCCc -3' miRNA: 3'- -UGUUCGGGgaCUUG----AGGCACCuGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 95648 | 0.71 | 0.564793 |
Target: 5'- cACGGGCUCCagGGGCUCCG-GGuuccccagcACGCCc -3' miRNA: 3'- -UGUUCGGGGa-CUUGAGGCaCC---------UGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 29577 | 0.71 | 0.564793 |
Target: 5'- cACAgcAGCUCCUcggcGGugUCCGacgcGGACGCCa -3' miRNA: 3'- -UGU--UCGGGGA----CUugAGGCa---CCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 49319 | 0.72 | 0.554738 |
Target: 5'- gGCGAGCCCCUGcagaUCCG-GGAC-CUg -3' miRNA: 3'- -UGUUCGGGGACuug-AGGCaCCUGcGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 130738 | 0.72 | 0.554738 |
Target: 5'- cGCucguGGCCgCUGGguccgacguguGCaCCGUGGACGCCc -3' miRNA: 3'- -UGu---UCGGgGACU-----------UGaGGCACCUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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