Results 41 - 60 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25573 | 3' | -56.8 | NC_005337.1 | + | 47241 | 0.7 | 0.61564 |
Target: 5'- cGCAAGCCCgUGAucguGCagUCGcUGGACGCg -3' miRNA: 3'- -UGUUCGGGgACU----UGa-GGC-ACCUGCGg -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 48159 | 0.68 | 0.736951 |
Target: 5'- gACGAGCCCCgcgagugcugGGACccggagugcgucUCCGgGGACGUg -3' miRNA: 3'- -UGUUCGGGGa---------CUUG------------AGGCaCCUGCGg -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 49319 | 0.72 | 0.554738 |
Target: 5'- gGCGAGCCCCUGcagaUCCG-GGAC-CUg -3' miRNA: 3'- -UGUUCGGGGACuug-AGGCaCCUGcGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 49705 | 0.67 | 0.812352 |
Target: 5'- cCAGcGCCCC-GGGCUCgGcgcgccgguugagcgGGACGCCg -3' miRNA: 3'- uGUU-CGGGGaCUUGAGgCa--------------CCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 50852 | 0.66 | 0.868339 |
Target: 5'- --cGGCaCCgaGAuGCU-CGUGGGCGCCa -3' miRNA: 3'- uguUCG-GGgaCU-UGAgGCACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 51632 | 0.67 | 0.79365 |
Target: 5'- gACGAGCUgCggucgGcGCUCCGcGGuCGCCa -3' miRNA: 3'- -UGUUCGGgGa----CuUGAGGCaCCuGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 52121 | 0.73 | 0.486158 |
Target: 5'- gACGGGCCggCCaUGGcCUUCGUGGACGCg -3' miRNA: 3'- -UGUUCGG--GG-ACUuGAGGCACCUGCGg -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 52211 | 0.66 | 0.860802 |
Target: 5'- uACAucacGCCCCgGGACguggCCGcgcucGACGCCa -3' miRNA: 3'- -UGUu---CGGGGaCUUGa---GGCac---CUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 52369 | 0.78 | 0.250875 |
Target: 5'- -gGGGCCgCUGAcggcuGCggggCCGUGGACGCCu -3' miRNA: 3'- ugUUCGGgGACU-----UGa---GGCACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 52771 | 0.66 | 0.853059 |
Target: 5'- aAUggGCUCCcGcGACgcgUCGUGGuACGCCg -3' miRNA: 3'- -UGuuCGGGGaC-UUGa--GGCACC-UGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 53261 | 0.71 | 0.585037 |
Target: 5'- --cGGCCCgUGGA---CGUGGACGCCa -3' miRNA: 3'- uguUCGGGgACUUgagGCACCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 56764 | 0.66 | 0.860802 |
Target: 5'- aACAAGCCCCguuAACg-CGUccGGuCGCCg -3' miRNA: 3'- -UGUUCGGGGac-UUGagGCA--CCuGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 57136 | 0.68 | 0.736951 |
Target: 5'- ---cGCCagCCUGGACgCCGUGGAgCGCa -3' miRNA: 3'- uguuCGG--GGACUUGaGGCACCU-GCGg -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 59419 | 0.69 | 0.717223 |
Target: 5'- aGCAGGCCCUUGAcCUcgCCGUucgGGACGa- -3' miRNA: 3'- -UGUUCGGGGACUuGA--GGCA---CCUGCgg -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 60389 | 0.67 | 0.802641 |
Target: 5'- cCAGGCagaCCUcGAugUCCGUGGccaugaGCCc -3' miRNA: 3'- uGUUCGg--GGA-CUugAGGCACCug----CGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 64774 | 0.66 | 0.841883 |
Target: 5'- gGCGAggcGUUCCUGGACUUCGaguucgccgacggGGACGUCg -3' miRNA: 3'- -UGUU---CGGGGACUUGAGGCa------------CCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 66039 | 0.66 | 0.875663 |
Target: 5'- cGCcGGCCgC---GCUCCGgaacccGGACGCCg -3' miRNA: 3'- -UGuUCGGgGacuUGAGGCa-----CCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 66051 | 0.66 | 0.875663 |
Target: 5'- -gGAGCCCCagggGAGCgaCCGcaucgcGGACGCg -3' miRNA: 3'- ugUUCGGGGa---CUUGa-GGCa-----CCUGCGg -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 68179 | 0.74 | 0.439721 |
Target: 5'- cCGAGUacgCCCUGAGCgcggccCCGgGGGCGCCg -3' miRNA: 3'- uGUUCG---GGGACUUGa-----GGCaCCUGCGG- -5' |
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25573 | 3' | -56.8 | NC_005337.1 | + | 68443 | 0.72 | 0.505378 |
Target: 5'- uACAGGCCCUcGAGCUCCa---GCGCCg -3' miRNA: 3'- -UGUUCGGGGaCUUGAGGcaccUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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